Workflow for generating competing hypothesis from models with parameter uncertainty

Differential and integral views of genetics in computational systems biology

(2011) D. Noble   Interface Focus

Parameter identification, experimental design and model falsification for biological network models using semidefinite programming

(2010) J. Hasenauer et al.   IET Systems Biology

Reconciling Coherent Oscillation with Modulationof Irregular Spiking Activity in Selective Attention:Gamma-Range Synchronization between Sensoryand Executive Cortical Areas

(2010) S. Ardid et al.   JOURNAL OF NEUROSCIENCE

Why are Nonlinear Fits to Data so Challenging?

(2010) Mark K. Transtrum et al.   PHYSICAL REVIEW LETTERS

When the Optimal Is Not the Best: Parameter Estimation in Complex Biological Models

(2010) Diego Fernández Slezak et al.   PLoS One

Computational disease modeling – fact or fiction?

(2009) Jesper N Tegnér et al.   BMC Systems Biology

Systems biology: model based evaluation and comparison of potential explanations for given biological data

(2009) Gunnar Cedersund et al.   FEBS Journal

Simplified yet highly accurate enzyme kinetics for cases of low substrate concentrations

(2009) Hanna M. Härdin et al.   FEBS Journal

Systems analysis of cellular networks under uncertainty

(2009) Hans-Michael Kaltenbach et al.   FEBS LETTERS

Deconstructing the core dynamics from a complex time-lagged regulatory biological circuit

(2009) O. Eriksson et al.   IET Systems Biology

A method for robust model order reduction in pharmacokinetics

(2009) Aristides Dokoumetzidis et al.   JOURNAL OF PHARMACOKINETICS AND PHARMACODYNAMICS

Regulatory T-cell immunity and its relevance to atherosclerosis

(2008) S. Taleb et al.   JOURNAL OF INTERNAL MEDICINE

Mapping global sensitivity of cellular network dynamics: sensitivity heat maps and a global summation law

(2008) D.A Rand   Journal of the Royal Society Interface

Model-Based Hypothesis Testing of Key Mechanisms in Initial Phase of Insulin Signaling

(2008) Gunnar Cedersund et al.   PLoS Computational Biology

Transcriptional Profiling Uncovers a Network of Cholesterol-Responsive Atherosclerosis Target Genes

(2008) Josefin Skogsberg et al.   PLoS Genetics