Genome sequencing and analysis of Salmonella enterica serovar Typhi strain CR0063 representing a carrier individual during an outbreak of typhoid fever in Kelantan, Malaysia

GapFiller: a de novo assembly approach to fill the gap within paired reads

(2012) Francesca Nadalin et al.   BMC BIOINFORMATICS

Genetic Fine Structure of a Salmonella enterica Serovar Typhi Strain Associated with the 2005 Outbreak of Typhoid Fever in Kelantan, Malaysia

(2012) R. Baddam et al.   JOURNAL OF BACTERIOLOGY

Genome Sequence and Comparative Pathogenomics Analysis of a Salmonella enterica Serovar Typhi Strain Associated with a Typhoid Carrier in Malaysia

(2012) K.-P. Yap et al.   JOURNAL OF BACTERIOLOGY

Insights from the Genome Sequence of a Salmonella enterica Serovar Typhi Strain Associated with a Sporadic Case of Typhoid Fever in Malaysia

(2012) Kien-Pong Yap et al.   JOURNAL OF BACTERIOLOGY

Whole-Genome Sequences and Comparative Genomics of Salmonella enterica Serovar Typhi Isolates from Patients with Fatal and Nonfatal Typhoid Fever in Papua New Guinea

(2012) Ramani Baddam et al.   JOURNAL OF BACTERIOLOGY

PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies

(2012) Sajia Akhter et al.   NUCLEIC ACIDS RESEARCH

Shedding light on Salmonella carriers

(2012) Smita Gopinath et al.   TRENDS IN MICROBIOLOGY

Genomes of Two Chronological Isolates (Helicobacter pylori 2017 and 2018) of the West African Helicobacter pylori Strain 908 Obtained from a Single Patient

(2011) T. S. Avasthi et al.   JOURNAL OF BACTERIOLOGY

Genome of a Novel Isolate of Paracoccus denitrificans Capable of Degrading N,N-Dimethylformamide

(2011) D. Siddavattam et al.   JOURNAL OF BACTERIOLOGY

Genome of Multidrug-Resistant Uropathogenic Escherichia coli Strain NA114 from India

(2011) T. S. Avasthi et al.   JOURNAL OF BACTERIOLOGY

An Ergatis-based prokaryotic genome annotation web server

(2010) Chris Hemmerich et al.   BIOINFORMATICS

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Genome of Helicobacter pylori Strain 908

(2010) S. H. Devi et al.   JOURNAL OF BACTERIOLOGY

Chronic and acute infection of the gall bladder by Salmonella Typhi: understanding the carrier state

(2010) Geoffrey Gonzalez-Escobedo et al.   NATURE REVIEWS MICROBIOLOGY

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

(2009) M. G. I. Langille et al.   BIOINFORMATICS

Tablet--next generation sequence assembly visualization

(2009) I. Milne et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Salmonella takes control: effector-driven manipulation of the host

(2009) Emma J McGhie et al.   CURRENT OPINION IN MICROBIOLOGY

FimH alleles direct preferential binding of Salmonella to distinct mammalian cells or to avian cells

(2009) A. Guo et al.   MICROBIOLOGY-SGM

Cooperation ofSalmonellapathogenicity islands 1 and 4 is required to breach epithelial barriers

(2008) Roman G. Gerlach et al.   CELLULAR MICROBIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH