'In silico expression analysis', a novel PathoPlant web tool to identify abiotic and biotic stress conditions associated with specific cis-regulatory sequences

cisExpress: motif detection in DNA sequences

(2013) Martin Triska et al.   BIOINFORMATICS

Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thaliana

(2013) Fabian Machens et al.   PLANT MOLECULAR BIOLOGY

Bioinformatic cis-element analyses performed in Arabidopsis and rice disclose bZIP- and MYB-related binding sites as potential AuxRE-coupling elements in auxin-mediated transcription

(2012) Kenneth W Berendzen et al.   BMC PLANT BIOLOGY

ArrayExpress update—trends in database growth and links to data analysis tools

(2012) Gabriella Rustici et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Integration of Bioinformatics and Synthetic Promoters Leads to the Discovery of Novel Elicitor-Responsive cis-Regulatory Sequences in Arabidopsis

(2012) J. Koschmann et al.   PLANT PHYSIOLOGY

Discovery of Stress Responsive DNA Regulatory Motifs in Arabidopsis

(2012) Shisong Ma et al.   PLoS One

‘MicroRNA Targets’, a new AthaMap web-tool for genome-wide identification of miRNA targets in Arabidopsis thaliana

(2012) Lorenz Bülow et al.   BioData Mining

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Thousands of Cis-Regulatory Sequence Combinations Are Shared by Arabidopsis and Poplar

(2011) J. Ding et al.   PLANT PHYSIOLOGY

An Abscisic Acid-AtNAP Transcription Factor-SAG113 Protein Phosphatase 2C Regulatory Chain for Controlling Dehydration in Senescing Arabidopsis Leaves

(2011) K. Zhang et al.   PLANT PHYSIOLOGY

Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana

(2011) C. Zou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular and Physiological Analysis of Drought Stress in Arabidopsis Reveals Early Responses Leading to Acclimation in Plant Growth

(2010) A. Harb et al.   PLANT PHYSIOLOGY

WRKY transcription factors

(2010) Paul J. Rushton et al.   TRENDS IN PLANT SCIENCE

AthaMap-assisted transcription factor target gene identification in Arabidopsis thaliana

(2010) L. Bulow et al.   Database-The Journal of Biological Databases and Curation

The word landscape of the non-coding segments of the Arabidopsis thaliana genome

(2009) Jens Lichtenberg et al.   BMC GENOMICS

AthaMap, integrating transcriptional and post-transcriptional data

(2008) L. Bulow et al.   NUCLEIC ACIDS RESEARCH

Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules

(2008) Todd P. Michael et al.   PLoS Genetics