Dynamical Basis for Drug Resistance of HIV-1 Protease

Global Dynamics of Proteins: Bridging Between Structure and Function

(2010) Ivet Bahar et al.   Annual Review of Biophysics

Computational Study of the Resistance Shown by the Subtype B/HIV-1 Protease to Currently Known Inhibitors

(2010) Alessandro Genoni et al.   BIOCHEMISTRY

Detecting and understanding combinatorial mutation patterns responsible for HIV drug resistance

(2010) J. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamics studies of luciferase using elastic network model: how the sequence distribution of luciferase determines its color

(2010) Y. Mao   PROTEIN ENGINEERING DESIGN & SELECTION

Markov clustering versus affinity propagation for the partitioning of protein interaction graphs

(2009) James Vlasblom et al.   BMC BIOINFORMATICS

Residue energy and mobility in sequence to global structure and dynamics of a HIV-1 protease (1DIFA) by a coarse-grained Monte Carlo simulation

(2009) R. B. Pandey et al.   JOURNAL OF CHEMICAL PHYSICS

Frequency-resolved communication maps for proteins and other nanoscale materials

(2009) David M. Leitner   JOURNAL OF CHEMICAL PHYSICS

Coarse-grained molecular dynamics of ligands binding into protein: The case of HIV-1 protease inhibitors

(2009) Dechang Li et al.   JOURNAL OF CHEMICAL PHYSICS

Large-scale evaluation of dynamically important residues in proteins predicted by the perturbation analysis of a coarse-grained elastic model

(2009) Wenjun Zheng et al.   BMC STRUCTURAL BIOLOGY

Analysis of correlated mutations in HIV-1 protease using spectral clustering

(2008) Ying Liu et al.   BIOINFORMATICS

Relating sequence evolution of HIV1-protease to its underlying molecular mechanics

(2008) K. Hamacher   GENE

Predicting drug resistance of the HIV-1 protease using molecular interaction energy components

(2008) Tingjun Hou et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Signaling pathways of PDZ2 domain: A molecular dynamics interaction correlation analysis

(2008) Yifei Kong et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS