Hierarchies in eukaryotic genome organization: Insights from polymer theory and simulations

Tension-dependent structural deformation alters single-molecule transition kinetics

(2011) B. Sudhanshu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Histone Depletion Facilitates Chromatin Loops on the Kilobasepair Scale

(2010) Philipp M. Diesinger et al.   BIOPHYSICAL JOURNAL

Local Geometry and Elasticity in Compact Chromatin Structure

(2010) Elena F. Koslover et al.   BIOPHYSICAL JOURNAL

Twist Propagation in Dinucleosome Arrays

(2010) Irina V. Dobrovolskaia et al.   BIOPHYSICAL JOURNAL

Topological interactions between ring polymers: Implications for chromatin loops

(2010) Manfred Bohn et al.   JOURNAL OF CHEMICAL PHYSICS

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate

(2010) Yin C Lin et al.   NATURE IMMUNOLOGY

Structure and binding of the H4 histone tail and the effects of lysine 16 acetylation

(2010) Darren Yang et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Living without 30nm chromatin fibers

(2010) Eden Fussner et al.   TRENDS IN BIOCHEMICAL SCIENCES

Chromatin Higher-order Structure and Dynamics

(2010) C. L. Woodcock et al.   Cold Spring Harbor Perspectives in Biology

Capturing the dynamic epigenome

(2010) Roger B Deal et al.   GENOME BIOLOGY

Depletion Effects Massively Change Chromatin Properties and Influence Genome Folding

(2009) Philipp M. Diesinger et al.   BIOPHYSICAL JOURNAL

Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin

(2009) Aurélien Bancaud et al.   EMBO JOURNAL

Global identification of yeast chromosome interactions using Genome conformation capture

(2009) C.D.M. Rodley et al.   FUNGAL GENETICS AND BIOLOGY

Entropic organization of interphase chromosomes

(2009) Peter R. Cook et al.   JOURNAL OF CELL BIOLOGY

A Tale of Tails: How Histone Tails Mediate Chromatin Compaction in Different Salt and Linker Histone Environments†

(2009) Gaurav Arya et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Mesoscale simulations of two nucleosome-repeat length oligonucleosomes

(2009) Tamar Schlick et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Spatially confined folding of chromatin in the interphase nucleus

(2009) J. Mateos-Langerak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions

(2009) S. A. Grigoryev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

The Influence of the Cylindrical Shape of the Nucleosomes and H1 Defects on Properties of Chromatin

(2008) Philipp M. Diesinger et al.   BIOPHYSICAL JOURNAL

Nucleosome Geometry and Internucleosomal Interactions Control the Chromatin Fiber Conformation

(2008) Nick Kepper et al.   BIOPHYSICAL JOURNAL

The 3D Structure of the Immunoglobulin Heavy-Chain Locus: Implications for Long-Range Genomic Interactions

(2008) Suchit Jhunjhunwala et al.   CELL

Brownian Dynamics Simulation of DNA Unrolling from the Nucleosome†

(2008) T. Wocjan et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Structure and Dynamics of Interphase Chromosomes

(2008) Angelo Rosa et al.   PLoS Computational Biology