Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association
Published 2013 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association
Authors
Keywords
-
Journal
Nature Communications
Volume 4, Issue 1, Pages -
Publisher
Springer Nature
Online
2013-11-22
DOI
10.1038/ncomms3809
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Transcriptomic and Genetic Analysis of Direct Interspecies Electron Transfer
- (2013) Pravin Malla Shrestha et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Electromicrobiology
- (2012) Derek R. Lovley Annual Review of Microbiology
- Interspecies Electron Transfer via Hydrogen and Formate Rather than Direct Electrical Connections in Cocultures of Pelobacter carbinolicus and Geobacter sulfurreducens
- (2012) Amelia-Elena Rotaru et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Promoting direct interspecies electron transfer with activated carbon
- (2012) Fanghua Liu et al. Energy & Environmental Science
- Functional responses of methanogenic archaea to syntrophic growth
- (2012) Christopher B Walker et al. ISME Journal
- Metabolic specialization and the assembly of microbial communities
- (2012) David R Johnson et al. ISME Journal
- Natural strategies for the spatial optimization of metabolism in synthetic biology
- (2012) Christina M Agapakis et al. Nature Chemical Biology
- OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities
- (2012) Ali R. Zomorrodi et al. PLoS Computational Biology
- Ecogenomics of microbial communities in bioremediation of chlorinated contaminated sites
- (2012) Farai Maphosa et al. Frontiers in Microbiology
- Biochemical characterization of purified OmcS, a c-type cytochrome required for insoluble Fe(III) reduction in Geobacter sulfurreducens
- (2011) Xinlei Qian et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Elimination of Thermodynamically Infeasible Loops in Steady-State Metabolic Models
- (2011) Jan Schellenberger et al. BIOPHYSICAL JOURNAL
- Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
- (2011) Jan Schellenberger et al. Nature Protocols
- A genetic system for Geobacter metallireducens: role of the flagellin and pilin in the reduction of Fe(III) oxide
- (2011) Pier-Luc Tremblay et al. Environmental Microbiology Reports
- Potential for Direct Interspecies Electron Transfer in Methanogenic Wastewater Digester Aggregates
- (2011) M. Morita et al. mBio
- Genomic Insights into Syntrophy: The Paradigm for Anaerobic Metabolic Cooperation
- (2010) Jessica R. Sieber et al. Annual Review of Microbiology
- Extraction of mRNA from Soil
- (2010) C. Mettel et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Purification and Characterization of OmcZ, an Outer-Surface, Octaheme c-Type Cytochrome Essential for Optimal Current Production by Geobacter sulfurreducens
- (2010) K. Inoue et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Functional integration of a metabolic network model and expression data without arbitrary thresholding
- (2010) Paul A. Jensen et al. BIOINFORMATICS
- Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments
- (2010) Kai Zhuang et al. ISME Journal
- Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions
- (2010) Aarash Bordbar et al. Molecular Systems Biology
- Emergent cooperation in microbial metabolism
- (2010) Edwin H Wintermute et al. Molecular Systems Biology
- Large-scale in silico modeling of metabolic interactions between cell types in the human brain
- (2010) Nathan E Lewis et al. NATURE BIOTECHNOLOGY
- High-throughput generation, optimization and analysis of genome-scale metabolic models
- (2010) Christopher S Henry et al. NATURE BIOTECHNOLOGY
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Comprehensive comparative analysis of strand-specific RNA sequencing methods
- (2010) Joshua Z Levin et al. NATURE METHODS
- In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling
- (2010) Radhakrishnan Mahadevan et al. NATURE REVIEWS MICROBIOLOGY
- Direct Exchange of Electrons Within Aggregates of an Evolved Syntrophic Coculture of Anaerobic Bacteria
- (2010) Z. M. Summers et al. SCIENCE
- Syntrophic butyrate and propionate oxidation processes: from genomes to reaction mechanisms
- (2010) Nicolai Müller et al. Environmental Microbiology Reports
- Environments that Induce Synthetic Microbial Ecosystems
- (2010) Niels Klitgord et al. PLoS Computational Biology
- Anaerobic Oxidation of Methane: Progress with an Unknown Process
- (2009) Katrin Knittel et al. Annual Review of Microbiology
- Evolution from a respiratory ancestor to fill syntrophic and fermentative niches: comparative fenomics of six Geobacteraceae species
- (2009) Jessica E Butler et al. BMC GENOMICS
- In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study
- (2009) Reed Taffs et al. BMC Systems Biology
- Genome-scale constraint-based modeling of Geobacter metallireducens
- (2009) Jun Sun et al. BMC Systems Biology
- Syntrophy in anaerobic global carbon cycles
- (2009) Michael J McInerney et al. CURRENT OPINION IN BIOTECHNOLOGY
- Electron transfer in syntrophic communities of anaerobic bacteria and archaea
- (2009) Alfons J. M. Stams et al. NATURE REVIEWS MICROBIOLOGY
- Transcriptome analysis by strand-specific sequencing of complementary DNA
- (2009) Dmitri Parkhomchuk et al. NUCLEIC ACIDS RESEARCH
- Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations
- (2009) Tom M Conrad et al. GENOME BIOLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Transcriptional activity of paddy soil bacterial communities
- (2008) Pravin Malla Shrestha et al. ENVIRONMENTAL MICROBIOLOGY
- Use of Randomized Sampling for Analysis of Metabolic Networks
- (2008) Jan Schellenberger et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Context-Specific Metabolic Networks Are Consistent with Experiments
- (2008) Scott A. Becker et al. PLoS Computational Biology
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started