Mass spectrometry-based proteomics: qualitative identification to activity-based protein profiling

General Statistical Modeling of Data from Protein Relative Expression Isobaric Tags

(2011) Florian P. Breitwieser et al.   JOURNAL OF PROTEOME RESEARCH

Comparison of ERLIC–TiO2, HILIC–TiO2, and SCX–TiO2for Global Phosphoproteomics Approaches

(2011) Mostafa Zarei et al.   JOURNAL OF PROTEOME RESEARCH

Evaluation of a High Resolving Power Time-of-Flight Mass Spectrometer for Drug Analysis in Terms of Resolving Power and Acquisition Rate

(2011) Anna Pelander et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Online Nanoflow Multidimensional Fractionation for High Efficiency Phosphopeptide Analysis

(2011) Scott B. Ficarro et al.   MOLECULAR & CELLULAR PROTEOMICS

Improving N-glycosylation efficiency in Escherichia coli using shotgun proteomics, metabolic network analysis, and selective reaction monitoring

(2010) Jagroop Pandhal et al.   BIOTECHNOLOGY AND BIOENGINEERING

Perspectives in Clinical Proteomics Conference: translating clinical proteomics into clinical practice

(2010) Catharine Sturgeon   Expert Review of Proteomics

Online Nanoflow RP−RP-MS Reveals Dynamics of Multicomponent Ku Complex in Response to DNA Damage

(2010) Feng Zhou et al.   JOURNAL OF PROTEOME RESEARCH

Evolution of Clinical Proteomics and its Role in Medicine

(2010) Emily Boja et al.   JOURNAL OF PROTEOME RESEARCH

A Statistics-based Platform for Quantitative N-terminome Analysis and Identification of Protease Cleavage Products

(2010) Ulrich auf dem Keller et al.   MOLECULAR & CELLULAR PROTEOMICS

Confident Phosphorylation Site Localization Using the Mascot Delta Score

(2010) Mikhail M. Savitski et al.   MOLECULAR & CELLULAR PROTEOMICS

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Copper-free click chemistry in living animals

(2010) P. V. Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pathway Palette: A rich internet application for peptide-, protein- and network-oriented analysis of MS data

(2010) Manor Askenazi et al.   PROTEOMICS

A Global Protein Kinase and Phosphatase Interaction Network in Yeast

(2010) A. Breitkreutz et al.   SCIENCE

Quantitative iTRAQ-Based Proteomic Identification of Candidate Biomarkers for Diabetic Nephropathy in Plasma of Type 1 Diabetic Patients

(2010) Anne Julie Overgaard et al.   Clinical Proteomics

Peptide Quantification Using 8-Plex Isobaric Tags and Electron Transfer Dissociation Tandem Mass Spectrometry

(2009) Doug Phanstiel et al.   ANALYTICAL CHEMISTRY

Magnetic Bead Processor for Rapid Evaluation and Optimization of Parameters for Phosphopeptide Enrichment

(2009) Scott B. Ficarro et al.   ANALYTICAL CHEMISTRY

Improved Electrospray Ionization Efficiency Compensates for Diminished Chromatographic Resolution and Enables Proteomics Analysis of Tyrosine Signaling in Embryonic Stem Cells

(2009) Scott B. Ficarro et al.   ANALYTICAL CHEMISTRY

Reversed-Phase-Reversed-Phase Liquid Chromatography Approach with High Orthogonality for Multidimensional Separation of Phosphopeptides

(2009) Chunxia Song et al.   ANALYTICAL CHEMISTRY

Monoacylglycerol Lipase Regulates a Fatty Acid Network that Promotes Cancer Pathogenesis

(2009) Daniel K. Nomura et al.   CELL

Phosphorylation Dynamics during Early Differentiation of Human Embryonic Stem Cells

(2009) Dennis Van Hoof et al.   Cell Stem Cell

Approaching clinical proteomics: current state and future fields of application in fluid proteomics

(2009) Rolf Apweiler et al.   CLINICAL CHEMISTRY AND LABORATORY MEDICINE

A Robust Error Model for iTRAQ Quantification Reveals Divergent Signaling between Oncogenic FLT3 Mutants in Acute Myeloid Leukemia

(2009) Yi Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

(2009) Terri A Addona et al.   NATURE BIOTECHNOLOGY

RBBP9: A tumor-associated serine hydrolase activity required for pancreatic neoplasia

(2009) D. J. Shields et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Atomic weights of the elements 2007 (IUPAC Technical Report)

(2009) Michael E. Wieser et al.   PURE AND APPLIED CHEMISTRY

Integrating Proteomic, Transcriptional, and Interactome Data Reveals Hidden Components of Signaling and Regulatory Networks

(2009) S.-s. C. Huang et al.   Science Signaling

Phosphopeptide enrichment using metal oxide affinity chromatography

(2009) Alexander Leitner   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Niobium(V) Oxide (Nb2O5): Application to Phosphoproteomics

(2008) Scott B. Ficarro et al.   ANALYTICAL CHEMISTRY

Relative Quantification of Proteins in Human Cerebrospinal Fluids by MS/MS Using 6-Plex Isobaric Tags

(2008) Loïc Dayon et al.   ANALYTICAL CHEMISTRY

Activity-Based Protein Profiling: From Enzyme Chemistry to Proteomic Chemistry

(2008) Benjamin F. Cravatt et al.   Annual Review of Biochemistry

Immobilized Metal Affinity Chromatography Revisited: pH/Acid Control toward High Selectivity in Phosphoproteomics

(2008) Chia-Feng Tsai et al.   JOURNAL OF PROTEOME RESEARCH

Phosphorylation-Specific MS/MS Scoring for Rapid and Accurate Phosphoproteome Analysis

(2008) Samuel H. Payne et al.   JOURNAL OF PROTEOME RESEARCH

Fully Automatic Separation and Identification of Phosphopeptides by Continuous pH-Gradient Anion Exchange Online Coupled with Reversed-Phase Liquid Chromatography Mass Spectrometry

(2008) Jie Dai et al.   JOURNAL OF PROTEOME RESEARCH

Peptide and Protein Quantification Using iTRAQ with Electron Transfer Dissociation

(2008) D PHANSTIEL et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Hydrophilic Interaction Chromatography Reduces the Complexity of the Phosphoproteome and Improves Global Phosphopeptide Isolation and Detection

(2008) Dean E. McNulty et al.   MOLECULAR & CELLULAR PROTEOMICS

A Multidimensional Chromatography Technology for In-depth Phosphoproteome Analysis

(2008) Claudio P. Albuquerque et al.   MOLECULAR & CELLULAR PROTEOMICS

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

A quantitative atlas of mitotic phosphorylation

(2008) N. Dephoure et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In Vivo Imaging of Membrane-Associated Glycans in Developing Zebrafish

(2008) S. T. Laughlin et al.   SCIENCE

Electrostatic Repulsion Hydrophilic Interaction Chromatography for Isocratic Separation of Charged Solutes and Selective Isolation of Phosphopeptides

(2007) Andrew J. Alpert   ANALYTICAL CHEMISTRY