Recovery of a Medieval Brucella melitensis Genome Using Shotgun Metagenomics

Yersinia pestis and the Plague of Justinian 541–543 AD: a genomic analysis

(2014) David M Wagner et al.   LANCET INFECTIOUS DISEASES

Genome-wide analysis of Italian sheep diversity reveals a strong geographic pattern and cryptic relationships between breeds

(2013) E. Ciani et al.   ANIMAL GENETICS

Palaeopathology and genes: Investigating the genetics of infectious diseases in excavated human skeletal remains and mummies from past populations

(2013) Evilena Anastasiou et al.   GENE

Diffuse idiopathic skeletal hyperostosis: clinical features and pathogenic mechanisms

(2013) Reuven Mader et al.   Nature Reviews Rheumatology

Metagenomic Analysis of Tuberculosis in a Mummy

(2013) Jacqueline Z.-M. Chan et al.   NEW ENGLAND JOURNAL OF MEDICINE

PATRIC, the bacterial bioinformatics database and analysis resource

(2013) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Comparison of Medieval and Modern Mycobacterium leprae

(2013) V. J. Schuenemann et al.   SCIENCE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing

(2012) Andreas Keller et al.   Nature Communications

Osteological and molecular identification of brucellosis in ancient Butrint, Albania

(2011) Michael J. Mutolo et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Identification of new IS711 insertion sites in Brucella abortus field isolates

(2011) Marcos Mancilla et al.   BMC MICROBIOLOGY

A draft genome of Yersinia pestis from victims of the Black Death

(2011) Kirsten I. Bos et al.   NATURE

Human skeletal paleopathology

(2011) Donald J. Ortner   International Journal of Paleopathology

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Origin, evolution and paleoepidemiology of brucellosis

(2010) R. D'ANASTASIO et al.   EPIDEMIOLOGY AND INFECTION

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Diffuse idiopathic skeletal hyperostosis in the Medici, Grand Dukes of Florence (XVI century)

(2009) Valentina Giuffra et al.   EUROPEAN SPINE JOURNAL

Whole-Genome-Based Phylogeny and Divergence of the Genus Brucella

(2009) J. T. Foster et al.   JOURNAL OF BACTERIOLOGY

Possible Brucellosis in an Early Hominin Skeleton from Sterkfontein, South Africa

(2009) Ruggero D'Anastasio et al.   PLoS One