Co-occurrence network analysis reveals thermodynamics-driven microbial interactions in methanogenic bioreactors

Thermodynamically diverse syntrophic aromatic compound catabolism

(2017) Masaru Konishi Nobu et al.   ENVIRONMENTAL MICROBIOLOGY

Chasing the elusive Euryarchaeota class WSA2: genomes reveal a uniquely fastidious methyl-reducing methanogen

(2016) Masaru Konishi Nobu et al.   ISME Journal

Microbes in the Water Infrastructure: Underpinning Our Society

(2016) Takashi Narihiro   MICROBES AND ENVIRONMENTS

A Single-Granule-Level Approach Reveals Ecological Heterogeneity in an Upflow Anaerobic Sludge Blanket Reactor

(2016) Kyohei Kuroda et al.   PLoS One

Significant performance enhancement of a UASB reactor by using acyl homoserine lactones to facilitate the long filaments of Methanosaeta harundinacea 6Ac

(2015) Lingyan Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor

(2015) Masaru K Nobu et al.   ISME Journal

Diversity Profile of Microbes Associated with Anaerobic Sulfur Oxidation in an Upflow Anaerobic Sludge Blanket Reactor Treating Municipal Sewage

(2015) Azrina A. Aida et al.   MICROBES AND ENVIRONMENTS

Biotechnological Aspects of Microbial Extracellular Electron Transfer

(2015) Souichiro Kato   MICROBES AND ENVIRONMENTS

Transcriptomic and Physiological Insights into the Robustness of Long Filamentous Cells of Methanosaeta harundinacea, Prevalent in Upflow Anaerobic Sludge Blanket Granules

(2014) Liguang Zhou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The nexus of syntrophy-associated microbiota in anaerobic digestion revealed by long-term enrichment and community survey

(2014) Takashi Narihiro et al.   ENVIRONMENTAL MICROBIOLOGY

The genome ofSyntrophorhabdus aromaticivoransstrain UI provides new insights for syntrophic aromatic compound metabolism and electron flow

(2014) Masaru K. Nobu et al.   ENVIRONMENTAL MICROBIOLOGY

Inhibitory Effects of Ferrihydrite on a Thermophilic Methanogenic Community

(2014) Chihaya Yamada et al.   MICROBES AND ENVIRONMENTS

Performance and microbial community profiles in an anaerobic reactor treating with simulated PTA wastewater: From mesophilic to thermophilic temperature

(2014) Xiang-kun Li et al.   WATER RESEARCH

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

p-Xylene Oxidation to Terephthalic Acid: A Literature Review Oriented toward Process Optimization and Development

(2013) Rogério A. F. Tomás et al.   CHEMICAL REVIEWS

Mesotoga infera sp. nov., a mesophilic member of the order Thermotogales, isolated from an underground gas storage aquifer

(2013) W. Ben Hania et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Iron-Oxide Minerals Affect Extracellular Electron-Transfer Paths of Geobacter spp.

(2013) Souichiro Kato et al.   MICROBES AND ENVIRONMENTS

Cultivating Yet-to-be Cultivated Microbes: The Challenge Continues

(2013) Takashi Narihiro et al.   MICROBES AND ENVIRONMENTS

Candidatus Methanogranum caenicola: a Novel Methanogen from the Anaerobic Digested Sludge, and Proposal of Methanomassiliicoccaceae fam. nov. and Methanomassiliicoccales ord. nov., for a Methanogenic Lineage of the Class Thermoplasmata

(2013) Takao Iino et al.   MICROBES AND ENVIRONMENTS

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Unexpected Stability of Bacteroidetes and Firmicutes Communities in Laboratory Biogas Reactors Fed with Different Defined Substrates

(2012) K. Kampmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification and quantification of key microbial trophic groups of methanogenic glucose degradation in an anaerobic digester sludge

(2012) Tsukasa Ito et al.   BIORESOURCE TECHNOLOGY

Mesotoga prima gen. nov., sp. nov., the first described mesophilic species of the Thermotogales

(2012) Camilla L. Nesbø et al.   EXTREMOPHILES

Sequential treatment of PTA wastewater in a two-stage UASB process: Focusing on p-toluate degradation and microbial distribution

(2012) Ji Young Kim et al.   WATER RESEARCH

Methanogenesis facilitated by electric syntrophy via (semi)conductive iron-oxide minerals

(2011) Souichiro Kato et al.   ENVIRONMENTAL MICROBIOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Analysis of 16S rRNA Amplicon Sequencing Options on the Roche/454 Next-Generation Titanium Sequencing Platform

(2011) Hideyuki Tamaki et al.   PLoS One

Comparative 16S rRNA gene surveys of granular sludge from three upflow anaerobic bioreactors treating purified terephthalic acid (PTA) wastewater

(2011) S. D. Perkins et al.   WATER SCIENCE AND TECHNOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium

(2010) Athanasios Lykidis et al.   ISME Journal

Ecological and Evolutionary Interactions in Syntrophic Methanogenic Consortia

(2010) Souichiro Kato et al.   MICROBES AND ENVIRONMENTS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Quantitative detection of culturable methanogenic archaea abundance in anaerobic treatment systems using the sequence-specific rRNA cleavage method

(2009) Takashi Narihiro et al.   ISME Journal

Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge

(2009) Delphine Rivière et al.   ISME Journal

Cultivation of Uncultured Chloroflexi Subphyla: Significance and Ecophysiology of Formerly Uncultured Chloroflexi 'Subphylum I' with Natural and Biotechnological Relevance

(2009) Takeshi Yamada et al.   MICROBES AND ENVIRONMENTS

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

(2009) Yong Wang et al.   PLoS One

Flagellum Mediates Symbiosis

(2009) T. Shimoyama et al.   SCIENCE

Syntrophorhabdus aromaticivorans gen. nov., sp. nov., the First Cultured Anaerobe Capable of Degrading Phenol to Acetate in Obligate Syntrophic Associations with a Hydrogenotrophic Methanogen

(2008) Y.-L. Qiu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Exilispira thermophila gen. nov., sp. nov., an anaerobic, thermophilic spirochaete isolated from a deep-sea hydrothermal vent chimney

(2008) H. Imachi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Pontibacter korlensis sp. nov., isolated from the desert of Xinjiang, China

(2008) L. Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

"Candidatus Cloacamonas Acidaminovorans": Genome Sequence Reconstruction Provides a First Glimpse of a New Bacterial Division

(2008) E. Pelletier et al.   JOURNAL OF BACTERIOLOGY

Syntrophic Acetate-Oxidizing Microbes in Methanogenic Environments

(2008) Satoshi Hattori   MICROBES AND ENVIRONMENTS

Identification of important microbial populations in the mesophilic and thermophilic phenol-degrading methanogenic consortia

(2007) Chia-Lung Chen et al.   WATER RESEARCH