RNA-Sequencing Analysis of 5' Capped RNAs Identifies Many New Differentially Expressed Genes in Acute Hepatitis C Virus Infection

Stabilization of hepatitis C virus RNA by an Ago2-miR-122 complex

(2012) T. Shimakami et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coordinate activation of inflammatory gene networks, alveolar destruction and neonatal death in AKNA deficient mice

(2011) Wenbin Ma et al.   CELL RESEARCH

AKNA: Another AT-hook transcription factor “hooking-up” with inflammation

(2011) Alison R Moliterno et al.   CELL RESEARCH

An RNA-protein complex links enhanced nuclear 3′ processing with cytoplasmic mRNA stabilization

(2011) Xinjun Ji et al.   EMBO JOURNAL

Up-regulation of Hedgehog pathway is associated with cellular permissiveness for hepatitis C virus replication

(2011) Steve S. Choi et al.   HEPATOLOGY

MIP-T3 Is a Negative Regulator of Innate Type I IFN Response

(2011) M.-H. J. Ng et al.   JOURNAL OF IMMUNOLOGY

Boceprevir for Untreated Chronic HCV Genotype 1 Infection

(2011) Fred Poordad et al.   NEW ENGLAND JOURNAL OF MEDICINE

Boceprevir for Previously Treated Chronic HCV Genotype 1 Infection

(2011) Bruce R. Bacon et al.   NEW ENGLAND JOURNAL OF MEDICINE

ENCODE Tiling Array Analysis Identifies Differentially Expressed Annotated and Novel 5′ Capped RNAs in Hepatitis C Infected Liver

(2011) Milan E. Folkers et al.   PLoS One

Hedgehog Signaling Antagonist Promotes Regression of Both Liver Fibrosis and Hepatocellular Carcinoma in a Murine Model of Primary Liver Cancer

(2011) George M. Philips et al.   PLoS One

Strategies for viral RNA stability: live long and prosper

(2011) Alexa M. Dickson et al.   TRENDS IN GENETICS

Genomewide characterization of non-polyadenylated RNAs

(2011) Li Yang et al.   GENOME BIOLOGY

Turning Hepatitis C into a Real Virus

(2010) Catherine L. Murray et al.   Annual Review of Microbiology

Measuring antiviral activity of benzimidazole molecules that alter IRES RNA structure with an infectious hepatitis C virus chimera expressing Renilla luciferase

(2010) Shuanghu Liu et al.   ANTIVIRAL RESEARCH

Sindbis Virus Usurps the Cellular HuR Protein to Stabilize Its Transcripts and Promote Productive Infections in Mammalian and Mosquito Cells

(2010) Kevin J. Sokoloski et al.   Cell Host & Microbe

Transcriptome sequencing, microarray, and proteomic analyses reveal cellular and metabolic impact of hepatitis C virus infection in vitro

(2010) Stephen D. Woodhouse et al.   HEPATOLOGY

Hedgehog signaling in the liver

(2010) Alessia Omenetti et al.   JOURNAL OF HEPATOLOGY

Gene Expression Profiling Indicates the Roles of Host Oxidative Stress, Apoptosis, Lipid Metabolism, and Intracellular Transport Genes in the Replication of Hepatitis C Virus

(2010) S. Blackham et al.   JOURNAL OF VIROLOGY

Viral factors induce Hedgehog pathway activation in humans with viral hepatitis, cirrhosis and hepatocellular carcinoma

(2010) Thiago de Almeida Pereira et al.   LABORATORY INVESTIGATION

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors

(2010) Andrew J Oler et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Genome-wide characterization of methylguanosine-capped and polyadenylated small RNAs in the rice blast fungus Magnaporthe oryzae

(2010) Malali Gowda et al.   NUCLEIC ACIDS RESEARCH

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

(2009) J. W. Nicol et al.   BIOINFORMATICS

Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers

(2009) Xinxia Peng et al.   BMC GENOMICS

The alpha-kinase family: an exceptional branch on the protein kinase tree

(2009) Jeroen Middelbeek et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Induction of sialyl-Lex expression by herpes simplex virus type 1 is dependent on viral immediate early RNA-activated transcription of host fucosyltransferase genes

(2009) K. Nystrom et al.   GLYCOBIOLOGY

N- andO-Glycans Modulate Galectin-1 Binding, CD45 Signaling, and T Cell Death

(2009) Lesley A. Earl et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Inhibin/activin-betaE subunit in normal and malignant human cervical tissue and cervical cancer cell lines

(2009) Florian Bergauer et al.   JOURNAL OF MOLECULAR HISTOLOGY

Restriction of Chlamydia pneumoniae replication in human dendritic cell by activation of indoleamine 2,3-dioxygenase

(2009) Florence Njau et al.   MICROBES AND INFECTION

A genome-wide genetic screen for host factors required for hepatitis C virus propagation

(2009) Q. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Altered interactions between stem-loop IV within the 5′ noncoding region of coxsackievirus RNA and poly(rC) binding protein 2: Effects on IRES-mediated translation and viral infectivity

(2009) Polen Sean et al.   VIROLOGY

Hepatitis C virus and type 2 diabetes

(2009) Francesco Negro et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Genomic Analysis Reveals a Potential Role for Cell Cycle Perturbation in HCV-Mediated Apoptosis of Cultured Hepatocytes

(2009) Kathie-Anne Walters et al.   PLoS Pathogens

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Impact of Mycophenolic Acid on the Functionality of Human Polymorphonuclear Neutrophils and Dendritic Cells during Interaction with Aspergillus fumigatus

(2008) M. Mezger et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks

(2008) David A Nix et al.   BMC BIOINFORMATICS

Glycosylation changes in hFUT1 transgenic mice increase TCR signaling and apoptosis resulting in thymocyte maturation arrest

(2008) Gregory T.C. Moore et al.   MOLECULAR IMMUNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Identification of PCBP2, a facilitator of IRES-mediated translation, as a novel constituent of stress granules and processing bodies

(2008) K. Fujimura et al.   RNA

Cell surface glycosylation diversity of embryonic thymic tissues

(2007) Erdal Balcan et al.   ACTA HISTOCHEMICA