Sequence-based prediction of transcription upregulation by auxin in plants
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Title
Sequence-based prediction of transcription upregulation by auxin in plants
Authors
Keywords
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Journal
Journal of Bioinformatics and Computational Biology
Volume 13, Issue 01, Pages 1540009
Publisher
World Scientific Pub Co Pte Lt
Online
2015-01-12
DOI
10.1142/s0219720015400090
References
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Related references
Note: Only part of the references are listed.- Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors
- (2014) D. Roeland Boer et al. CELL
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- Emerging roles of the corepressors NCoR1 and SMRT in homeostasis
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- Auxin and the ubiquitin pathway. Two players–one target: the cell cycle in action
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- Jasmonate signalling: a copycat of auxin signalling?
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- HOW MULTIPLE AUXIN RESPONSIVE ELEMENTS MAY INTERACT IN PLANT PROMOTERS: A REVERSE PROBLEM SOLUTION
- (2013) VICTORIA V. MIRONOVA et al. Journal of Bioinformatics and Computational Biology
- Bioinformatic cis-element analyses performed in Arabidopsis and rice disclose bZIP- and MYB-related binding sites as potential AuxRE-coupling elements in auxin-mediated transcription
- (2012) Kenneth W Berendzen et al. BMC PLANT BIOLOGY
- Noise-mean relationship in mutated promoters
- (2012) G. Hornung et al. GENOME RESEARCH
- Reciprocal Loss of CArG-Boxes and Auxin Response Elements Drives Expression Divergence of MPF2-Like MADS-Box Genes Controlling Calyx Inflation
- (2012) Muhammad Ramzan Khan et al. PLoS One
- The auxin signalling network translates dynamic input into robust patterning at the shoot apex
- (2011) T. Vernoux et al. Molecular Systems Biology
- The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
- (2011) Philippe Lamesch et al. NUCLEIC ACIDS RESEARCH
- De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference
- (2011) Jens Keilwagen et al. PLoS Computational Biology
- Specific/nonspecific binding of TBP to promoter DNA of the auxin response factor genes in plants correlated with ARFs function on gene transcription (activator/repressor)
- (2010) V. V. Mironova et al. Doklady Biochemistry and Biophysics
- SNPS IN THE HIV-1 TATA BOX AND THE AIDS PANDEMIC
- (2010) VALENTIN V. SUSLOV et al. Journal of Bioinformatics and Computational Biology
- The TATA-Binding Protein Core Domain in Solution Variably Bends TATA Sequences via a Three-Step Binding Mechanism†
- (2009) Roberto F. Delgadillo et al. BIOCHEMISTRY
- Regulation of preprocambial cell state acquisition by auxin signaling in Arabidopsis leaves
- (2009) T. J. Donner et al. DEVELOPMENT
- A step-by-step model of TBP/TATA box binding allows predicting human hereditary diseases by single nucleotide polymorphism
- (2008) P. M. Ponomarenko et al. Doklady Biochemistry and Biophysics
- Comprehensive Transcriptome Analysis of Auxin Responses in Arabidopsis
- (2008) Ivan A. Paponov et al. Molecular Plant
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