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Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

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Comprehensive molecular characterization of clear cell renal cell carcinoma

(2013)   NATURE

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Intron-centric estimation of alternative splicing from RNA-seq data

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Alternate Splicing of the p53 Inhibitor HDMX Offers a Superior Prognostic Biomarker than p53 Mutation in Human Cancer

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A Three-Gene Expression Signature Model for Risk Stratification of Patients with Neuroblastoma

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Gene expression profiling in breast cancer: classification, prognostication, and prediction

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Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression

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Prognostic Impact of Gene Expression–Based Classification for Neuroblastoma

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The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

(2010)   NATURE BIOTECHNOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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Comparison of performance of one-color and two-color gene-expression analyses in predicting clinical endpoints of neuroblastoma patients

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TopHat: discovering splice junctions with RNA-Seq

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Predicting outcomes for children with neuroblastoma using a multigene-expression signature: a retrospective SIOPEN/COG/GPOH study

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A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

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