A novel workflow correlating RNA-seq data to Phythophthora infestans resistance levels in wild Solanum species and potato clones

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Comparative transcriptome analysis of eggplant (Solanum melongena L.) and turkey berry (Solanum torvum Sw.): phylogenomics and disease resistance analysis

(2014) Xu Yang et al.   BMC GENOMICS

Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions

(2014) Ashfaq Ali et al.   BMC GENOMICS

Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case

(2014) David Amar et al.   BMC PLANT BIOLOGY

Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean

(2014) E. Bellucci et al.   PLANT CELL

Genome Structures and Transcriptomes Signify Niche Adaptation for the Multiple-Ion-Tolerant Extremophyte Schrenkiella parvula

(2014) D.-H. Oh et al.   PLANT PHYSIOLOGY

Genomic analysis of the native European Solanum species, S. dulcamara

(2013) Nunzio D’Agostino et al.   BMC GENOMICS

A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly

(2013) Warren R Francis et al.   BMC GENOMICS

Solanumresistance genes againstPhytophthora infestansand their corresponding avirulence genes

(2013) Jan Rodewald et al.   MOLECULAR PLANT PATHOLOGY

Filamentous plant pathogen effectors in action

(2013) Martha C. Giraldo et al.   NATURE REVIEWS MICROBIOLOGY

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Loss of Function in Mlo Orthologs Reduces Susceptibility of Pepper and Tomato to Powdery Mildew Disease Caused by Leveillula taurica

(2013) Zheng Zheng et al.   PLoS One

Comparative transcript profiling by SuperSAGE identifies novel candidate genes for controlling potato quantitative resistance to late blight not compromised by late maturity

(2013) Astrid M. Draffehn et al.   Frontiers in Plant Science

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Identification and localisation of the NB-LRR gene family within the potato genome

(2012) Florian Jupe et al.   BMC GENOMICS

Functional analysis of potato genes involved in quantitative resistance to Phytophthora infestans

(2012) Juan Du et al.   MOLECULAR BIOLOGY REPORTS

Qualitative and Quantitative Late Blight Resistance in the Potato Cultivar Sarpo Mira Is Determined by the Perception of Five Distinct RXLR Effectors

(2012) Hendrik Rietman et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants

(2012) Walter Sanseverino et al.   NUCLEIC ACIDS RESEARCH

Comparative Analysis of Zinc Finger Proteins Involved in Plant Disease Resistance

(2012) Santosh Kumar Gupta et al.   PLoS One

Reshaping of the maize transcriptome by domestication

(2012) R. Swanson-Wagner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative next-generation mapping of the Phytophthora infestans resistance gene Rpi-dlc2 in a European accession of Solanum dulcamara

(2012) T. M. Golas et al.   THEORETICAL AND APPLIED GENETICS

Understanding and Exploiting Late Blight Resistance in the Age of Effectors

(2011) Vivianne G.A.A. Vleeshouwers et al.   Annual Review of Phytopathology

Ionotropic glutamate receptor (iGluR)-like channels mediate MAMP-induced calcium influx inArabidopsis thaliana

(2011) Mark Kwaaitaal et al.   BIOCHEMICAL JOURNAL

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Can Weed Hosts Increase Aggressiveness of Phytophthora infestans on Potato?

(2011) L. Grönberg et al.   PHYTOPATHOLOGY

Of PAMPs and Effectors: The Blurred PTI-ETI Dichotomy

(2011) Bart P.H.J. Thomma et al.   PLANT CELL

DIMINUTO 1 affects the lignin profile and secondary cell wall formation in Arabidopsis

(2011) Zakir Hossain et al.   PLANTA

Functional stacking of three resistance genes against Phytophthora infestans in potato

(2011) Suxian Zhu et al.   TRANSGENIC RESEARCH

GOSemSim: an R package for measuring semantic similarity among GO terms and gene products

(2010) G. Yu et al.   BIOINFORMATICS

Natural Occurrence of Phytophthora infestans Causing Late Blight on Woody Nightshade (Solanum dulcamara) in New York

(2010) K. L. Deahl et al.   PLANT DISEASE

Activity of tonoplast proton pumps and Na+/H+ exchange in potato cell cultures is modulated by salt

(2009) F. Queiros et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mapping and Cloning of Late Blight Resistance Genes fromSolanum venturiiUsing an Interspecific Candidate Gene Approach

(2009) Mathieu A. Pel et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Rpi-vnt1.1, aTm-22Homolog fromSolanum venturii, Confers Resistance to Potato Late Blight

(2009) Simon J. Foster et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Emerging Concepts in Effector Biology of Plant-Associated Organisms

(2009) Saskia A. Hogenhout et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

(2009) Brian J. Haas et al.   NATURE

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Downy Mildew Resistance in Arabidopsis by Mutation of HOMOSERINE KINASE

(2009) M. van Damme et al.   PLANT CELL

Coevolution of Plants and Their Pathogens in Natural Habitats

(2009) J. J. Burdon et al.   SCIENCE

Phytophthora infestans: the plant (and R gene) destroyer

(2008) WILLIAM FRY   MOLECULAR PLANT PATHOLOGY

The Phytophthora infestans Avirulence Gene Avr4 Encodes an RXLR-dEER Effector

(2008) Pieter M. J. A. van Poppel et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis

(2008) Qi Zheng et al.   NUCLEIC ACIDS RESEARCH

The F-Box Protein ACRE189/ACIF1 Regulates Cell Death and Defense Responses Activated during Pathogen Recognition in Tobacco and Tomato

(2008) H. A. van den Burg et al.   PLANT CELL

Arabidopsis DMR6 encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew

(2008) Mireille van Damme et al.   PLANT JOURNAL

Effector Genomics Accelerates Discovery and Functional Profiling of Potato Disease Resistance and Phytophthora Infestans Avirulence Genes

(2008) Vivianne G. A. A. Vleeshouwers et al.   PLoS One

Societal Costs of Late Blight in Potato and Prospects of Durable Resistance Through Cisgenic Modification

(2008) A. J. Haverkort et al.   POTATO RESEARCH