Dynamic transition of chemolithotrophic sulfur-oxidizing bacteria in response to amendment with nitrate in deposited marine sediments

Effect of autotrophic denitrification on nitrate migration in sulfide-rich marine sediments

(2015) Zhen Zhang et al.   JOURNAL OF SOILS AND SEDIMENTS

Ultra-high-sensitivity stable-isotope probing of rRNA by high-throughput sequencing of isopycnic centrifugation gradients

(2015) Tomo Aoyagi et al.   Environmental Microbiology Reports

The complete genome sequence for putative H2- and S-oxidizerCandidatusSulfuricurvum sp., assembledde novofrom an aquifer-derived metagenome

(2014) Kim M. Handley et al.   ENVIRONMENTAL MICROBIOLOGY

Rhizosphere heterogeneity shapes abundance and activity of sulfur-oxidizing bacteria in vegetated salt marsh sediments

(2014) François Thomas et al.   Frontiers in Microbiology

Short-Read Assembly of Full-Length 16S Amplicons Reveals Bacterial Diversity in Subsurface Sediments

(2013) Christopher S. Miller et al.   PLoS One

Geo-environmental issues induced by the 2011 off the Pacific Coast of Tohoku Earthquake and tsunami

(2013) Toru Inui et al.   SOILS AND FOUNDATIONS

Interactions between Nitrate-Reducing and Sulfate-Reducing Bacteria Coexisting in a Hydrogen-Fed Biofilm

(2012) Aura Ontiveros-Valencia et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The Impact of Sediment and Carbon Fluxes on the Biogeochemistry of Methane and Sulfur in Littoral Baltic Sea Sediments (Himmerfjärden, Sweden)

(2012) Nguyen Manh Thang et al.   Estuaries and Coasts

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Reevaluation of colorimetric iron determination methods commonly used in geomicrobiology

(2012) Juliane Braunschweig et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Increase in Alphaproteobacteria in association with a polychaete, Capitella sp. I, in the organically enriched sediment

(2011) Tadao Kunihiro et al.   ISME Journal

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones

(2011) J. Grote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity of RuBisCO and ATP citrate lyase genes in soda lake sediments

(2010) Olga L. Kovaleva et al.   FEMS MICROBIOLOGY ECOLOGY

Effects of organic enrichment on nematode assemblages in a microcosm experiment

(2010) Maickel Armenteros et al.   MARINE ENVIRONMENTAL RESEARCH

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of iron-reducing microorganisms in anoxic rice paddy soil by 13C-acetate probing

(2009) Tomoyuki Hori et al.   ISME Journal

Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance

(2008) Satoshi Nakagawa et al.   FEMS MICROBIOLOGY ECOLOGY