Whole genome sequencing and analysis reveal insights into the genetic structure, diversity and evolutionary relatedness of luxI and luxR homologs in bacteria belonging to the Sphingomonadaceae family

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation

(2014) Brejnev Muhizi Muhire et al.   PLoS One

LuxR solos in Photorhabdus species

(2014) Sophie Brameyer et al.   Frontiers in Cellular and Infection Microbiology

Acyl-Homoserine Lactone Quorum Sensing: From Evolution to Application

(2013) Martin Schuster et al.   Annual Review of Microbiology

LuxR- and LuxI-Type Quorum-Sensing Circuits Are Prevalent in Members of the Populus deltoides Microbiome

(2013) Amy L. Schaefer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of 26 Sphingomonad Genomes Reveals Diverse Environmental Adaptations and Biodegradative Capabilities

(2013) Frank O. Aylward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

In silico and experimental methods revealed highly diverse bacteria with quorum sensing and aromatics biodegradation systems – A potential broad application on bioremediation

(2013) Yili Huang et al.   BIORESOURCE TECHNOLOGY

Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation

(2013) Han Gan et al.   BMC GENOMICS

Structural Insights into a Novel Interkingdom Signaling Circuit by Cartography of the Ligand-Binding Sites of the Homologous Quorum Sensing LuxR-Family

(2013) Sonia Covaceuszach et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Organization of the Quorum Sensing luxI/R Family Genes in Burkholderia

(2013) Kumari Choudhary et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pyrones as bacterial signaling molecules

(2013) Alexander O Brachmann et al.   Nature Chemical Biology

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

(2013) Nicola Segata et al.   Nature Communications

Acyl-homoserine lactone-based quorum sensing in the Roseobacter clade: complex cell-to-cell communication controls multiple physiologies

(2013) W. Nathan Cude et al.   Frontiers in Microbiology

Genome Sequence of Novosphingobium sp. Strain Rr 2-17, a Nopaline Crown Gall-Associated Bacterium Isolated from Vitis vinifera L. Grapevine

(2012) Han Ming Gan et al.   JOURNAL OF BACTERIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A complex LuxR-LuxI type quorum sensing network in a roseobacterial marine sponge symbiont activates flagellar motility and inhibits biofilm formation

(2012) Jindong Zan et al.   MOLECULAR MICROBIOLOGY

The inter-kingdom solo OryR regulator ofXanthomonas oryzaeis important for motility

(2012) Juan F. González et al.   MOLECULAR PLANT PATHOLOGY

XagR, a LuxR Homolog, Contributes to the Virulence ofXanthomonas axonopodispv.glycinesto Soybean

(2012) Tiyakhon Chatnaparat et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A novel widespread interkingdom signaling circuit

(2012) Juan F. González et al.   TRENDS IN PLANT SCIENCE

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

Isovaleryl-homoserine lactone, an unusual branched-chain quorum-sensing signal from the soybean symbiont Bradyrhizobium japonicum

(2011) A. Lindemann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

LasR Receptor for Detection of Long-Chain Quorum-Sensing Signals: Identification of N-Acyl-homoserine Lactones Encoded by the avsI Locus of Agrobacterium vitis

(2010) Michael A. Savka et al.   CURRENT MICROBIOLOGY

LuxR-type quorum-sensing regulators that are detached from common scents

(2010) Ching-Sung Tsai et al.   MOLECULAR MICROBIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

ALINE: a WYSIWYG protein-sequence alignment editor for publication-quality alignments

(2009) Charles Simon Bond et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Quorum-sensing signal production byAgrobacterium vitisstrains and their tumor-inducing and tartrate-catabolic plasmids

(2009) Nathanial Lowe et al.   FEMS MICROBIOLOGY LETTERS

Sphingosinicella vermicomposti sp. nov., isolated from vermicompost, and emended description of the genus Sphingosinicella

(2009) M. Yasir et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Identification of an rsh Gene from a Novosphingobium sp. Necessary for Quorum-Sensing Signal Accumulation

(2009) H. M. Gan et al.   JOURNAL OF BACTERIOLOGY

LuxR-family 'solos': bachelor sensors/regulators of signalling molecules

(2009) S. Subramoni et al.   MICROBIOLOGY-SGM

Molecular characteristics of xenobiotic-degrading sphingomonads

(2008) Andreas Stolz   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Sphingosinicella soli sp. nov., isolated from an alkaline soil in Korea

(2008) J.-H. Yoon et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

AHL-driven quorum-sensing circuits: their frequency and function among the Proteobacteria

(2008) Rebecca J Case et al.   ISME Journal

OryR Is a LuxR-Family Protein Involved in Interkingdom Signaling between PathogenicXanthomonas oryzaepv. oryzae and Rice

(2008) Sara Ferluga et al.   JOURNAL OF BACTERIOLOGY