Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing

mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus

(2010) M. Legendre et al.   GENOME RESEARCH

Giant Viruses: Conflicts in Revisiting the Virus Concept

(2010) Patrick Forterre   INTERVIROLOGY

Mimivirus: the emerging paradox of quasi-autonomous viruses

(2010) Jean-Michel Claverie et al.   TRENDS IN GENETICS

Improved variant discovery through local re-alignment of short-read next-generation sequencing data using SRMA

(2010) Nils Homer et al.   GENOME BIOLOGY

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The polyadenylation site of Mimivirus transcripts obeys a stringent 'hairpin rule'

(2009) D. Byrne et al.   GENOME RESEARCH

BFAST: An Alignment Tool for Large Scale Genome Resequencing

(2009) Nils Homer et al.   PLoS One