4.4 Article

The human parvovirus B19 non-structural protein 1 N-terminal domain specifically binds to the origin of replication in the viral DNA

Journal

VIROLOGY
Volume 449, Issue -, Pages 297-303

Publisher

ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.virol.2013.11.031

Keywords

Parvovirus; B19; Non-structural protein 1; Origin of replication; Protein:DNA interaction

Categories

Funding

  1. National Institute of Allergy and Infectious Diseases [R01AI070723]
  2. National Institutes of Health

Ask authors/readers for more resources

The non-structural protein 1 (NS1) of human parvovirus B19 plays a critical role in viral DNA replication. Previous studies identified the origin of replication in the viral DNA, which contains four DNA elements, namely NSBE1 to NSBE4, that are required for optimal viral replication (Guan et al., 2009). Here we have demonstrated in vitro that the NS1 N-terminal domain (NS1N) binds to the origin of replication in a sequence-specific, length-dependent manner that requires NSBE1 and NSBE2, while NSBE3 and NSBE4 are dispensable. Mutagenesis analysis has identified nucleotides in NSBE1 and NSBE2 that are critical for NS1N binding. These results suggest that NS1 binds to the NSBE1-NSBE2 region in the origin of replication, while NSBE3 and NSBE4 may provide binding sites for potential cellular factors. Such a specialized nucleoprotein complex may enable NS1 to nick the terminal resolution site and separate DNA strands during replication. (C) 2013 Elsevier Inc. All rights reserved.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.4
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Psychology, Multidisciplinary

Influence of attentional resources and emotional reactivity on emotional memory enhancement in adolescents and adults

Ai-bao Zhou, Yue Yuan, Hai-yan Wang, Hai-yan Zhao, Jin-guo Zhao, Yi-tong Wang, Lu Cai

Summary: This study investigated the impact of attentional resources and emotional reactivity on emotional memory enhancement in adolescents and adults. The results showed that age and attentional resources had an interaction effect on emotional memory enhancement, with higher levels observed in adults compared to adolescents and in the sufficient attentional resources task. Negative emotions were significantly higher than positive and neutral emotions, and positive emotions were significantly higher than neutral emotions. Emotional reactivity and age also had an interaction effect on emotional memory enhancement, with adolescents and adults with high emotional reactivity showing significantly higher levels of negative emotions compared to positive and neutral emotions. Emotional memory enhancement was moderated by attentional resources during the encoding process and emotional reactivity.

CURRENT PSYCHOLOGY (2023)

Article Materials Science, Ceramics

High-temperature oxidation behavior of the SiC layer of TRISO particles in low-pressure oxygen

Adam Bratten, Visharad Jalan, Meng Shi, Tyler Gerczak, Haiming Wen, Peter Doyle, Haiyan Zhao, Xiaoqing He

Summary: Surrogate tristructural-isotropic (TRISO)-coated fuel particles were oxidized in 0.2 kPa O-2 to examine the behavior of the SiC layer. The analysis of the resulting SiO2 layers showed a majority of smooth, amorphous SiO2 with a constant thickness indicative of passive oxidation. The activation energy for oxide growth was consistent across all temperatures and the presence of irregular grain size influenced the oxidation response of the SiC layer.

JOURNAL OF THE AMERICAN CERAMIC SOCIETY (2023)

Article Chemistry, Multidisciplinary

In situ integration of a cocatalyst and heterojunction to a WO3 photoanode with enhanced photoelectrochemical performance via phosphatization

Faqi Zhan, Haiyan Zhao, Guochang Wen, Zhiqing Ma, Yisi Liu, Min Zhu, Yuehong Zheng, Dalin Chen, Peiqing La

Summary: A novel ternary NiPx/NiWO4/WO3 photoanode with a heterojunction and cocatalyst was fabricated by an in situ phosphatization process. The heterojunction between NiWO4 and WO3 improved electron-hole pair separation and transfer, while NiPx acted as a cocatalyst to accelerate the surface water oxidation reaction. Compared to the pristine WO3 film, the photocurrent density at 1.23 V vs. RHE was increased by 2.55-fold.

NEW JOURNAL OF CHEMISTRY (2023)

Article Environmental Sciences

Adsorptive decontamination of antibiotics from livestock wastewater by using alkaline-modified biochar

Haiyan Zhao, Ziqian Wang, Yonghong Liang, Tianxiang Wu, Yiliang Chen, Jieru Yan, Yiyong Zhu, Dahu Ding

Summary: Efficient adsorption of antibiotics from livestock wastewater is urgently needed. In this study, alkaline-modified biochar with larger surface area and pore volume was used for the adsorption of different types of antibiotics. The adsorption process was mainly determined by chemisorption and was influenced by solution pH. The study also revealed that the -OH groups on biochar surface were the dominant active sites for antibiotics adsorption. Furthermore, the biochar showed synergistic adsorption towards Zn2+/Cu2+ and antibiotics in a multi-pollutants system.

ENVIRONMENTAL RESEARCH (2023)

Article Biochemistry & Molecular Biology

Preparations of antibacterial yellow-green-fluorescent carbon dots and carbon dots-lysozyme complex and their applications in bacterial imaging and bacteria/biofilm inhibition/clearance

Dan Zhao, Xiaoyun Li, Mengyu Xu, Yan Jiao, Huan Liu, Xincai Xiao, Haiyan Zhao

Summary: This paper reports the preparation of yellow-green-fluorescent and high-quantum yield carbon dots (4-ACDs) and investigates their optical properties. The 4-ACDs show excellent broad-spectrum antibacterial activity and biocompatibility, making them ideal for cell imaging. The coupling of 4-ACDs and lysozyme (LZM) results in CDs-LZM complex with strong antibacterial activity against Gram-positive bacteria and efficient elimination of biofilm.

INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES (2023)

Article Chemistry, Applied

Study on the spatio-temporal variation of arabinoxylan and alkylresorcinol in wheat grains

Tianjia Sun, Yingquan Zhang, Qingli Yang, Jinfu Ban, Boli Guo, Bo Zhang, Haiyan Zhao

Summary: The study aimed to investigate the spatio-temporal variation of arabinoxylan (AX) and alkylresorcinol (AR) in wheat. The contents of total arabinoxylan (TOT-AX), water-extractable arabinoxylan (WE-AX), and alkylresorcinol (AR) in wheat from the main wheat producing areas of China were analyzed. Factors such as geographical origin, variety, harvest year, and irrigation frequency were found to significantly affect the AX and AR contents in wheat grains. The study identified Xiaoyan 22, Xinmai 18, and Hengguan 35 as the varieties with the highest TOT-AX, WE-AX, and AR contents, respectively.

JOURNAL OF FOOD COMPOSITION AND ANALYSIS (2023)

Article Chemistry, Physical

Insight Understanding of Ultrathin Carbon-Deficient Molybdenum Carbide Catalytic Activity for CO2 Conversion into Hydrocarbon Fuels

Fan Yang, Jiayun Pei, Haiyan Zhao

Summary: This study investigates ultrathin carbon-deficient molybdenum carbide (MoC0.66) as a catalyst for the capture and conversion of carbon dioxide (CO2) to methane (CH4). The results show that MoC(0.66) exhibits remarkable catalytic activity for CO2 hydrogenation to CH4. Unlike conventional catalysts, the limiting step of the MoC0.66 catalyst is determined by the release of *OH species during the CO2 reduction reaction (CO2RR). Increasing the temperature improves the release of H2O and CH4 as well as the selectivity of the CO2RR.

JOURNAL OF PHYSICAL CHEMISTRY C (2023)

Article Biochemistry & Molecular Biology

Design and Application of Thymol Electrochemical Sensor Based on the PtNPs-CPOFs-MWCNTs Composite

Na Li, Hongyue Zhang, Min Cui, Jujie Ren, Jingru Huang, Bao Sun, Haiyan Zhao, Cong Zhang

Summary: The preparation of covalent polyoxometalate organic frameworks (CPOFs) was introduced using polyoxometalate and covalent organic frameworks. The CPOFs were synthesized by functionalizing polyoxometalate with an amine group and then reacting it with 2,4,6-trihydroxybenzene-1,3,5-tricarbaldehyde. The PtNPs-CPOFs-MWCNTs nanocomposites were formed by incorporating PtNPs and MWCNTs into the CPOFs material, resulting in excellent catalytic activity and electrical conductivity for the electrochemical thymol sensors.

MOLECULES (2023)

Article Engineering, Marine

Design and climbing control of an underwater robot for ship hull cleaning

Lepeng Chen, Rongxin Cui, Weisheng Yan, Hui Xu, Haiyan Zhao, Haoquan Li

Summary: Underwater robot has potential to clean ship hull fouling, but design and control are challenging. Use of negative pressure and magnetic adsorption technologies limit utility on rough hulls and warships. We propose a robot with thrusters and crawler belts to adapt to common hulls. A climbing controller guides robot to cover hull without repetition or omission, overcoming difficulties of inconsistent crawler belts and inaccurate depth measurement. Field experiments on giant ship verify effectiveness of proposed solution and controller.

OCEAN ENGINEERING (2023)

Article Chemistry, Analytical

Ultrasensitive detection and distinction of pollutants based on SERS assisted by machine learning algorithms

Shuang Lin, Xiaoyu Fang, Guoqiang Fang, Fengping Liu, Haoyu Dong, Haiyan Zhao, Jing Zhang, Bin Dong

Summary: In this study, a 3D clean cascade-enhanced nanosensor assisted by machine learning algorithms was developed for accurate and ultrasensitive identification of multiple pollutants. The SERS substrate achieved cascading electromagnetic energy with a remarkable enhancement factor of 8.35 x 109, thanks to the combination of micro-level polystyrene sphere porous array and nano-level Au-Ag clusters. With high cleanliness and ultra-sensitivity, hazardous pollutants with similar geometry and Raman peaks at ultra-low concentration were successfully distinguished using principal component analysis. Therefore, this efficient and clean SERS substrate, coupled with artificial intelligence, could advance the application of SERS technology in accurate identification of trace contaminants.

SENSORS AND ACTUATORS B-CHEMICAL (2023)

Article Genetics & Heredity

The complete mitochondrial genome of Picromerus lewisi Scott 1874 (Hemiptera: Pentatomidae: Asopinae)

Xiao-han Chen, Meng Leng, Di-hui Yao, Hai-yan Zhao, Mao-fa Yang

Summary: In this study, we confirmed that the complete mitochondrial genome of Picromerus lewisi Scott has similar characteristics to other Hemiptera species. The mitogenome of P. lewisi is 18,123 bp long with 74.0% A + T content and contains 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNAs, and one control region. Phylogenetic analysis based on 13 PCGs from 17 Panheteroptera species revealed that P. lewisi is closely related to E. thomsoni within the Pentatomidae family.

MITOCHONDRIAL DNA PART B-RESOURCES (2023)

Article Environmental Sciences

Performance of alkali and Cu-modified ZSM-5 during catalytic ozonation of polyvinyl alcohol in aqueous solution

Jiayu Dong, Xianni Song, Shuchi Zhang, Mengyu Tan, Haiyan Zhao, Donglei Wu

Summary: A novel hierarchical Cu/ZSM-5 catalyst with large pore volume and size was prepared for the catalytic ozonation of PVA. The catalyst exhibited excellent mineralization performance, with a TOC removal rate of 47.86% after 60 minutes of reaction. O-1(2) played a more significant role than ·OH in PVA removal. The catalyst showed high catalytic activity and stability, making it promising for the treatment of refractory pollutants via catalytic ozonation.

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH (2023)

Article Chemistry, Physical

Thermomechanical Process Simulation and Experimental Verification for Laser Additive Manufacturing of Inconel(R)718

Muhammad Qasim Zafar, Jinnan Wang, Zhenlin Zhang, Chaochao Wu, Haiyan Zhao, Ghulam Hussain, Ninshu Ma

Summary: Laser cladding is a promising technique for fabrications, remanufacturing, and repair of metallic components. Residual stresses caused by melting and solidification in the process often lead to geometric discrepancies and deterioration of the end product. A hybrid FEM scheme is adopted to efficiently predict the temperature field, residual stress, and distortion in multilayer powder-fed laser cladding. The accuracy of the simulation is validated through experiments, showing precise agreement for residual stress and distortion measurements.

MATERIALS (2023)

Article Radiology, Nuclear Medicine & Medical Imaging

Replacing secretin-enhanced MRCP with MRI radiomics model based on a fully automated pancreas segmentation for assessing pancreatic exocrine function in chronic pancreatitis

Yun Bian, Jian Zhou, Mengmeng Zhu, Jieyu Yu, Haiyan Zhao, Xu Fang, Fang Liu, Tiegong Wang, Jing Li, Li Wang, Jianping Lu, Chengwei Shao

Summary: This study aimed to develop and validate a radiomics nomogram based on a fully automated pancreas segmentation for the assessment of pancreatic exocrine function. The performance of the radiomics nomogram was compared with the pancreatic flow output rate (PFR) and conclusions were drawn on the replacement of secretin-enhanced magnetic resonance cholangiopancreatography (S-MRCP) by the radiomics nomogram for pancreatic exocrine function assessment.

EUROPEAN RADIOLOGY (2023)

Article Virology

Identification of host essential factors for recombinant AAV transduction of the polarized human airway epithelium

Siyuan Hao, Xiujuan Zhang, Kang Ning, Zehua Feng, Soo Yeun Park, Cagla Aksu Kuz, Shane McFarlin, Donovan Richart, Fang Cheng, Elizabeth Yan Zhang, Aaron Zhang-Chen, Ziying Yan, Jianming Qiu

Summary: rAAV2.5T, selected through directed evolution, is capable of efficiently transducing human airway epithelium. Our study revealed that KIAA0319L is not essential for vector internalization but plays a critical role in efficient vector transduction to human airway epithelium. We also identified a novel gene, WDR63, which is important for vector transduction of human airway epithelium but not for vector internalization and nuclear entry. Additionally, our study discovered the significant transduction potential of rAAV2.5T in the basal stem cells of human airway epithelium, highlighting its utility in gene editing for pulmonary genetic diseases.

JOURNAL OF VIROLOGY (2023)

Article Virology

Hemagglutinin affects replication, stability and airborne transmission of the H9N2 subtype avian influenza virus

Naiqing Xu, Xinen Tang, Xin Wang, Miao Cai, Xiaowen Liu, Xiaolong Lu, Shunlin Hu, Min Gu, Jiao Hu, Ruyi Gao, Kaituo Liu, Yu Chen, Xiufan Liu, Xiaoquan Wang

Summary: This study found that the H9N2 subtype avian influenza virus has a high airborne transmissibility, while the H7N9 virus does not. The Hemagglutinin protein of the H9N2 virus was found to play a key role in replication, stability, and airborne transmission.

VIROLOGY (2024)

Article Virology

Contagious ecthyma in Egypt: Clinical, virological and molecular explorations

Samar S. Ewies, Sabry M. Tamam, Ahmed S. Abdel-Moneim, Sherin R. Rouby

Summary: Contagious ecthyma (CE) is a highly contagious viral disease of sheep and goats worldwide. The study provided a clinical description of CE and screened for genetic variation in the B2L gene. Infected sheep exhibited anorexia and oral lesions, while inoculated chicken embryos showed pock lesions. The B2L gene was successfully amplified and found to be highly conserved.

VIROLOGY (2024)

Article Virology

Genetic characterization of newly emerging avian reovirus variants in chickens with viral arthritis/tenosynovitis in Israel

Yigal Farnoushi, Dan Heller, Avishai Lublin

Summary: In recent years, new variants of avian reovirus (ARV) have caused a variety of symptoms in chickens worldwide, including viral arthritis/tenosynovitis. This study analyzed emerging ARV variants in Israel and found significant genetic diversity. Most ARV isolates in Israel belonged to genotypic cluster 5 (GC5). The study suggests that Israel has not experienced the emergence of new ARV variants since the introduction of the live vaccine (ISR-7585), but ongoing monitoring is needed due to the continuous emergence of ARV variants.

VIROLOGY (2024)

Article Virology

Mutations in the 3′ non-coding region of a no-known vector flavivirus Yokose virus increased its replication ability in mosquito C6/36 cells

Shigeru Tajima, Michiyo Kataoka, Yuki Takamatsu, Hideki Ebihara, Chang-Kweng Lim

Summary: Yokose virus (YOKV), a bat-associated flavivirus, was found to replicate at a slower rate in mosquito cells compared to other mosquito-borne flaviviruses. Specific nucleotide mutations in the virus were identified to enhance its proliferation ability in mosquito cells.

VIROLOGY (2024)

Article Virology

Innate immune responses reverse HIV cognitive disease in mice: Profile by RNAseq in the brain

Alejandra Borjabad, Baojun Dong, Wei Chao, David J. Volsky, Mary Jane Potash

Summary: This study investigated HIV brain disease using a mouse model, and found that poly I:C can reverse associated cognitive impairment and reduce virus burden. The results also revealed transcriptional changes related to neuronal function and innate immune responses.

VIROLOGY (2024)

Article Virology

Identification of subgenomic mRNAs derived from the coronavirus 1a/1b protein gene: Implications for coronavirus transcription

Ching-Hung Lin, Feng-Cheng Hsieh, Meilin Wang, Chieh Hsu, Hsuan-Wei Hsu, Chun-Chun Yang, Cheng-Yao Yang, Hung-Yi Wu

Summary: This study demonstrates that the synthesis of coronavirus subgenomic mRNA is not solely determined by the sequence homology between the leader TRS and TRS-B, but also by the disassociation of the coronavirus polymerase from the viral genome. This finding provides a new insight into the transcription mechanism of coronaviruses.

VIROLOGY (2024)

Article Virology

Expression dynamics of the aplysia abyssovirus

Nicholas S. Kron, Benjamin W. Neuman, Sathish Kumar, Patricia L. Blackwelder, Dayana Vidal, Delphina Z. Walker-Phelan, Patrick D. I. Gibbs, Lynne A. Fieber, Michael C. Schmale

Summary: Two recent studies documented the genome of a novel virus in marine animals, finding that the virus is widespread in apparently healthy animals but not highly expressed in neurons. The studies also identified viral replication factories and high levels of defective genomes in chronically infected animals.

VIROLOGY (2024)

Article Virology

Molecular detection and characterization of highly pathogenic H5N1 clade 2.3.4.4b avian influenza viruses among hunter-harvested wild birds provides evidence for three independent introductions into Alaska

Andrew M. Ramey, Laura C. Scott, Christina A. Ahlstrom, Evan J. Buck, Alison R. Williams, Mia Kim Torchetti, David E. Stallknecht, Rebecca L. Poulson

Summary: We successfully detected and characterized highly pathogenic avian influenza viruses in hunter-harvested wild waterfowl samples from western Alaska. Genomic analysis revealed three independent viral introductions into Alaska. Our findings demonstrate the utility and potential limitations of using molecular processing approaches directly on original swab samples for viral research and monitoring.

VIROLOGY (2024)

Article Virology

Inhibitory effects of quercetin on porcine epidemic diarrhea virus in vitro and in vivo

Ting Gong, Dongdong Wu, Yongzhi Feng, Xing Liu, Qi Gao, Xiaoyu Zheng, Zebu Song, Heng Wang, Guihong Zhang, Lang Gong

Summary: This study discovered that quercetin can inhibit PEDV replication both in vivo and in vitro, and alleviate the clinical symptoms and intestinal injury caused by the virus. This provides a new direction for the development of PED antiviral drugs.

VIROLOGY (2024)

Article Virology

Reassortant H9N2 canine influenza viruses containing the pandemic H1N1/ 2009 ribonucleoprotein complex circulating in pigs acquired enhanced virulence in mice

Min Zhu, Hao Zeng, Jianqiao He, Yaohui Zhu, Pingping Wang, Jianing Guo, Jinfan Guo, Huabo Zhou, Yifeng Qin, Kang Ouyang, Zuzhang Wei, Weijian Huang, Ying Chen

Summary: The reassortment between avian H9N2 and Eurasian avian-like (EA) H1N1 viruses may have potentially changed from avian-to-mammals adaptation. This study found that the introduction of EA H1N1 internal genes into H9N2 virus restored the replication capability and resulted in extreme virulence in some cases. This raises new concerns for public health due to the possible coexistence of H9N2 and EA H1N1 viruses in dogs.

VIROLOGY (2024)