Quantitative and functional interrogation of parent-of-origin allelic expression biases in the brain

Phenotypic Outcomes of Imprinted Gene Models in Mice: Elucidation of Pre- and Postnatal Functions of Imprinted Genes

(2014) Mary A.M. Cleaton et al.   Annual Review of Genomics and Human Genetics

Programming and Inheritance of Parental DNA Methylomes in Mammals

(2014) Lu Wang et al.   CELL

A Novel Statistical Approach for Jointly Analyzing RNA-Seq Data from F 1 Reciprocal Crosses and Inbred Lines

(2014) Fei Zou et al.   GENETICS

Zac1 Regulates Cell Cycle Arrest in Neuronal Progenitors via Tcf4

(2014) U. Schmidt-Edelkraut et al.   MOLECULAR AND CELLULAR BIOLOGY

The role of genomic imprinting in biology and disease: an expanding view

(2014) Jo Peters   NATURE REVIEWS GENETICS

The Cerebellum, Sensitive Periods, and Autism

(2014) Samuel S.-H. Wang et al.   NEURON

The Ubiquitin Ligase ASB4 Promotes Trophoblast Differentiation through the Degradation of ID2

(2014) W. H. Davin Townley-Tilson et al.   PLoS One

Snx14 Regulates Neuronal Excitability, Promotes Synaptic Transmission, and Is Imprinted in the Brain of Mice

(2014) Hsien-Sung Huang et al.   PLoS One

Flexible analysis of RNA-seq data using mixed effects models

(2013) Ernest Turro et al.   BIOINFORMATICS

Imprinted silencing is extended over broad chromosomal domains in mouse extra-embryonic lineages

(2013) Tomasz M Kulinski et al.   CURRENT OPINION IN CELL BIOLOGY

Clustered protocadherins

(2013) W. V. Chen et al.   DEVELOPMENT

Assessment of transcript reconstruction methods for RNA-seq

(2013) Tamara Steijger et al.   NATURE METHODS

Systematic evaluation of spliced alignment programs for RNA-seq data

(2013) Pär G Engström et al.   NATURE METHODS

The Neuron Identity Problem: Form Meets Function

(2013) Gord Fishell et al.   NEURON

The UCSC Genome Browser database: 2014 update

(2013) Donna Karolchik et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2014

(2013) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Imprinted genes in mouse placental development and the regulation of fetal energy stores

(2013) S J Tunster et al.   REPRODUCTION

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Base-Resolution Analyses of Sequence and Parent-of-Origin Dependent DNA Methylation in the Mouse Genome

(2012) Wei Xie et al.   CELL

Development and evolution of cerebellar neural circuits

(2012) Mitsuhiro Hashimoto et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Deciphering the role of malin in the lafora progressive myoclonus epilepsy

(2012) Carlos Romá-Mateo et al.   IUBMB LIFE

Protection against De Novo Methylation Is Instrumental in Maintaining Parent-of-Origin Methylation Inherited from the Gametes

(2012) Charlotte Proudhon et al.   MOLECULAR CELL

A survey of tissue-specific genomic imprinting in mammals

(2012) Adam R. Prickett et al.   MOLECULAR GENETICS AND GENOMICS

Autistic-like behaviour and cerebellar dysfunction in Purkinje cell Tsc1 mutant mice

(2012) Peter T. Tsai et al.   NATURE

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Streaming fragment assignment for real-time analysis of sequencing experiments

(2012) Adam Roberts et al.   NATURE METHODS

Epigenetic control of alternative mRNA processing at the imprinted Herc3/Nap1l5 locus

(2012) Michael Cowley et al.   NUCLEIC ACIDS RESEARCH

A new strategy to reduce allelic bias in RNA-Seq readmapping

(2012) Ravi Vijaya Satya et al.   NUCLEIC ACIDS RESEARCH

Importance of the matriline for genomic imprinting, brain development and behaviour

(2012) E. B. Keverne   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Intronic Parent-of-Origin Dependent Differential Methylation at the Actn1 Gene Is Conserved in Rodents but Is Not Associated with Imprinted Expression

(2012) John D. Calaway et al.   PLoS One

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Alternative Splicing of RNA Triplets Is Often Regulated and Accelerates Proteome Evolution

(2012) Robert K. Bradley et al.   PLOS BIOLOGY

Imprinted Genes … and the Number Is?

(2012) Gavin Kelsey et al.   PLoS Genetics

Critical Evaluation of Imprinted Gene Expression by RNA–Seq: A New Perspective

(2012) Brian DeVeale et al.   PLoS Genetics

Hydroxylation of 5-Methylcytosine by TET1 Promotes Active DNA Demethylation in the Adult Brain

(2011) Junjie U. Guo et al.   CELL

The multiple roles of the cyclin-dependent kinase inhibitory protein p57KIP2 in cerebral cortical neurogenesis

(2011) Anna Tury et al.   Developmental Neurobiology

Endothelial Cell Migration on Fibronectin Is Regulated by Syntaxin 6-mediated α5β1 Integrin Recycling

(2011) Ajit Tiwari et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

In Embryonic Stem Cells, ZFP57/KAP1 Recognize a Methylated Hexanucleotide to Affect Chromatin and DNA Methylation of Imprinting Control Regions

(2011) Simon Quenneville et al.   MOLECULAR CELL

AlleleSeq: analysis of allele-specific expression and binding in a network framework

(2011) J. Rozowsky et al.   Molecular Systems Biology

Distinct physiological and behavioural functions for parental alleles of imprinted Grb10

(2011) Alastair S. Garfield et al.   NATURE

Postnatal loss of Dlk1 imprinting in stem cells and niche astrocytes regulates neurogenesis

(2011) Sacri R. Ferrón et al.   NATURE

Mammalian Genomic Imprinting

(2011) M. S. Bartolomei et al.   Cold Spring Harbor Perspectives in Biology

BAG3: a multifaceted protein that regulates major cell pathways

(2011) A Rosati et al.   Cell Death & Disease

Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads

(2011) Ernest Turro et al.   GENOME BIOLOGY

Unwitting hosts fall victim to imprinting

(2010) Ruth B. McCole et al.   Epigenetics

Brain function and chromatin plasticity

(2010) Catherine Dulac   NATURE

A dicer-independent miRNA biogenesis pathway that requires Ago catalysis

(2010) Sihem Cheloufi et al.   NATURE

A genomic atlas of mouse hypothalamic development

(2010) Tomomi Shimogori et al.   NATURE NEUROSCIENCE

Genomic imprinting of experience-dependent cortical plasticity by the ubiquitin ligase gene Ube3a

(2010) M. Sato et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Resolution Analysis of Parent-of-Origin Allelic Expression in the Mouse Brain

(2010) C. Gregg et al.   SCIENCE

Statistical inferences for isoform expression in RNA-Seq

(2009) Hui Jiang et al.   BIOINFORMATICS

Maternally-inherited Grb10 reduces placental size and efficiency

(2009) Marika Charalambous et al.   DEVELOPMENTAL BIOLOGY

HSF1-mediated BAG3 Expression Attenuates Apoptosis in 4-Hydroxynonenal-treated Colon Cancer Cells via Stabilization of Anti-apoptotic Bcl-2 Proteins

(2009) Aaron T. Jacobs et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Begain gene marks the centromeric boundary of the imprinted region on mouse chromosome 12

(2009) Sascha Tierling et al.   MAMMALIAN GENOME

LGI1-associated epilepsy through altered ADAM23-dependent neuronal morphology

(2009) Katherine Owuor et al.   MOLECULAR AND CELLULAR NEUROSCIENCE

Maternally Inherited Birk Barel Mental Retardation Dysmorphism Syndrome Caused by a Mutation in the Genomically Imprinted Potassium Channel KCNK9

(2008) Ortal Barel et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Global Survey of Genomic Imprinting by Transcriptome Sequencing

(2008) Tomas Babak et al.   CURRENT BIOLOGY

Regulation of alternative polyadenylation by genomic imprinting

(2008) A. J. Wood et al.   GENES & DEVELOPMENT

Failure of neuronal homeostasis results in common neuropsychiatric phenotypes

(2008) Melissa B. Ramocki et al.   NATURE

Syntaxin 6 regulates nerve growth factor-dependent neurite outgrowth

(2008) Hiroyuki Kabayama et al.   NEUROSCIENCE LETTERS

The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs

(2008) T. Mituyama et al.   NUCLEIC ACIDS RESEARCH

A likelihood framework to analyse phyletic patterns

(2008) O. Cohen et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transcriptome-Wide Identification of Novel Imprinted Genes in Neonatal Mouse Brain

(2008) Xu Wang et al.   PLoS One

Neuroanatomy of autism

(2008) David G. Amaral et al.   TRENDS IN NEUROSCIENCES

Scaling regression inputs by dividing by two standard deviations

(2007) Andrew Gelman   STATISTICS IN MEDICINE