Negative regulation of ABA signaling by WRKY33 is critical for Arabidopsis immunity towards Botrytis cinerea 2100

Simultaneous analysis of apolar phytohormones and 1-aminocyclopropan-1-carboxylic acid by high performance liquid chromatography/electrospray negative ion tandem mass spectrometry via 9-fluorenylmethoxycarbonyl chloride derivatization

(2014) Jörg Ziegler et al.   JOURNAL OF CHROMATOGRAPHY A

The role of abscisic acid in fruit ripening and responses to abiotic stress

(2014) Ping Leng et al.   JOURNAL OF EXPERIMENTAL BOTANY

TheArabidopsis thalianamitogen-activated protein kinases MPK3 and MPK6 target a subclass of ‘VQ-motif’-containing proteins to regulate immune responses

(2014) Pascal Pecher et al.   NEW PHYTOLOGIST

The bHLH Transcription Factor HBI1 Mediates the Trade-Off between Growth and Pathogen-Associated Molecular Pattern-Triggered Immunity in Arabidopsis

(2014) M. Fan et al.   PLANT CELL

The Arabidopsis LecRK-VI.2 associates with the pattern-recognition receptor FLS2 and primesNicotiana benthamianapattern-triggered immunity

(2014) Pin-Yao Huang et al.   PLANT JOURNAL

TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression

(2014) M. Zander et al.   PLANT PHYSIOLOGY

The Functional Consequences of Variation in Transcription Factor Binding

(2014) Darren A. Cusanovich et al.   PLoS Genetics

bZIPs and WRKYs: two large transcription factor families executing two different functional strategies

(2014) Carles M. Llorca et al.   Frontiers in Plant Science

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

JAV1 Controls Jasmonate-Regulated Plant Defense

(2013) Po Hu et al.   MOLECULAR CELL

Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thaliana

(2013) Fabian Machens et al.   PLANT MOLECULAR BIOLOGY

Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis

(2013) Katherine Noelani Chang et al.   eLife

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana

(2013) Michael Krogh Jensen et al.   FEBS Open Bio

Plant Immunity to Necrotrophs

(2012) Tesfaye Mengiste   Annual Review of Phytopathology

Evolution goes GAGA: GAGA binding proteins across kingdoms

(2012) Nathalie Berger et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Coronatine Promotes Pseudomonas syringae Virulence in Plants by Activating a Signaling Cascade that Inhibits Salicylic Acid Accumulation

(2012) Xiao-yu Zheng et al.   Cell Host & Microbe

Dual transcriptional activator and repressor roles of TBX20 regulate adult cardiac structure and function

(2012) Noboru J. Sakabe et al.   HUMAN MOLECULAR GENETICS

MYC2: The Master in Action

(2012) Kemal Kazan et al.   Molecular Plant

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

Arabidopsis RAP2.2 plays an important role in plant resistance to Botrytis cinerea and ethylene responses

(2012) Yang Zhao et al.   NEW PHYTOLOGIST

The Lectin Receptor Kinase-VI.2 Is Required for Priming and Positively Regulates Arabidopsis Pattern-Triggered Immunity

(2012) P. Singh et al.   PLANT CELL

The Conjugated Auxin Indole-3-Acetic Acid-Aspartic Acid Promotes Plant Disease Development

(2012) R. Gonzalez-Lamothe et al.   PLANT CELL

Auxin ControlsArabidopsisAdventitious Root Initiation by Regulating Jasmonic Acid Homeostasis

(2012) Laurent Gutierrez et al.   PLANT CELL

Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis

(2012) O. Windram et al.   PLANT CELL

Disruption of Abscisic Acid Signaling Constitutively Activates Arabidopsis Resistance to the Necrotrophic Fungus Plectosphaerella cucumerina

(2012) A. Sanchez-Vallet et al.   PLANT PHYSIOLOGY

Arabidopsis WRKY33 Is a Key Transcriptional Regulator of Hormonal and Metabolic Responses toward Botrytis cinerea Infection

(2012) R. P. Birkenbihl et al.   PLANT PHYSIOLOGY

Structural and Functional Analysis of VQ Motif-Containing Proteins in Arabidopsis as Interacting Proteins of WRKY Transcription Factors

(2012) Y. Cheng et al.   PLANT PHYSIOLOGY

ERF5 and ERF6 Play Redundant Roles as Positive Regulators of JA/Et-Mediated Defense against Botrytis cinerea in Arabidopsis

(2012) Caroline S. Moffat et al.   PLoS One

NF-Y Recruits Both Transcription Activator and Repressor to Modulate Tissue- and Developmental Stage-Specific Expression of Human γ-Globin Gene

(2012) Xingguo Zhu et al.   PLoS One

Structure and function of abscisic acid receptors

(2012) Takuya Miyakawa et al.   TRENDS IN PLANT SCIENCE

Dual-Level Regulation of ACC Synthase Activity by MPK3/MPK6 Cascade and Its Downstream WRKY Transcription Factor during Ethylene Induction in Arabidopsis

(2012) Guojing Li et al.   PLoS Genetics

Hormone Crosstalk in Plant Disease and Defense: More Than Just JASMONATE-SALICYLATE Antagonism

(2011) Alexandre Robert-Seilaniantz et al.   Annual Review of Phytopathology

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Single-tube linear DNA amplification (LinDA) for robust ChIP-seq

(2011) Pattabhiraman Shankaranarayanan et al.   NATURE METHODS

Phosphorylation of a WRKY Transcription Factor by Two Pathogen-Responsive MAPKs Drives Phytoalexin Biosynthesis inArabidopsis

(2011) Guohong Mao et al.   PLANT CELL

Arabidopsis Sigma Factor Binding Proteins Are Activators of the WRKY33 Transcription Factor in Plant Defense

(2011) Z. Lai et al.   PLANT CELL

Epoxycarotenoid cleavage by NCED5 fine-tunes ABA accumulation and affects seed dormancy and drought tolerance with other NCED family members

(2011) Anne Frey et al.   PLANT JOURNAL

MYB46 Modulates Disease Susceptibility to Botrytis cinerea in Arabidopsis

(2011) V. Ramirez et al.   PLANT PHYSIOLOGY

Genome-wide transcription factor binding: beyond direct target regulation

(2011) Kyle L. MacQuarrie et al.   TRENDS IN GENETICS

Transcriptional Plant Responses Critical for Resistance Towards Necrotrophic Pathogens

(2011) Rainer P. Birkenbihl et al.   Frontiers in Plant Science

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

PEPR2 Is a Second Receptor for the Pep1 and Pep2 Peptides and Contributes to Defense Responses in Arabidopsis

(2010) Y. Yamaguchi et al.   PLANT CELL

Tryptophan-derived secondary metabolites in Arabidopsis thaliana confer non-host resistance to necrotrophic Plectosphaerella cucumerina fungi

(2010) Andrea Sanchez-Vallet et al.   PLANT JOURNAL

A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana

(2010) Xiaofei Yu et al.   PLANT JOURNAL

The Arabidopsis Botrytis Susceptible1 Interactor Defines a Subclass of RING E3 Ligases That Regulate Pathogen and Stress Responses

(2010) H. Luo et al.   PLANT PHYSIOLOGY

WRKY transcription factors

(2010) Paul J. Rushton et al.   TRENDS IN PLANT SCIENCE

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Fight to the death: Arabidopsis thaliana defense response to fungal necrotrophic pathogens

(2009) Joanna Łaźniewska et al.   ACTA PHYSIOLOGIAE PLANTARUM

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

TheArabidopsisATAF1, a NAC Transcription Factor, Is a Negative Regulator of Defense Responses Against Necrotrophic Fungal and Bacterial Pathogens

(2009) Xiao'e Wang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Networking by small-molecule hormones in plant immunity

(2009) Corné M J Pieterse et al.   Nature Chemical Biology

Arabidopsis WUSCHEL Is a Bifunctional Transcription Factor That Acts as a Repressor in Stem Cell Regulation and as an Activator in Floral Patterning

(2009) M. Ikeda et al.   PLANT CELL

The Role of WRKY Transcription Factors in Plant Immunity

(2009) S. P. Pandey et al.   PLANT PHYSIOLOGY

The Arabidopsis RING Finger E3 Ligase RHA2a Is a Novel Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development

(2009) Q. Bu et al.   PLANT PHYSIOLOGY

The multifaceted role of ABA in disease resistance

(2009) Jurriaan Ton et al.   TRENDS IN PLANT SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Role of the Arabidopsis thaliana NAC transcription factors ANAC019 and ANAC055 in regulating jasmonic acid-signaled defense responses

(2008) Qingyun Bu et al.   CELL RESEARCH

Arabidopsis MAP kinase 4 regulates gene expression through transcription factor release in the nucleus

(2008) Jin-Long Qiu et al.   EMBO JOURNAL

Complex Genetics Control Natural Variation in Arabidopsis thaliana Resistance to Botrytis cinerea

(2008) H. C. Rowe et al.   GENETICS

Global Switches and Fine-Tuning—ABA Modulates Plant Pathogen Defense

(2008) Bob Asselbergh et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

(2008) Anton Valouev et al.   NATURE METHODS

The Transcriptional Activator Pti4 Is Required for the Recruitment of a Repressosome Nucleated by Repressor SEBF at the Potato PR-10a Gene

(2008) R. Gonzalez-Lamothe et al.   PLANT CELL

Transcriptional regulation by an NAC (NAM-ATAF1,2-CUC2) transcription factor attenuates ABA signalling for efficient basal defence towardsBlumeria graminisf. sp.hordeiin Arabidopsis

(2008) Michael K. Jensen et al.   PLANT JOURNAL

Role of plant hormones in plant defence responses

(2008) Rajendra Bari et al.   PLANT MOLECULAR BIOLOGY

Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function

(2008) Ingo Ciolkowski et al.   PLANT MOLECULAR BIOLOGY

The AP2/ERF Domain Transcription Factor ORA59 Integrates Jasmonic Acid and Ethylene Signals in Plant Defense

(2008) M. Pre et al.   PLANT PHYSIOLOGY