Assessing long-distance RNA sequence connectivity via RNA-templated DNA–DNA ligation
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Assessing long-distance RNA sequence connectivity via RNA-templated DNA–DNA ligation
Authors
Keywords
-
Journal
eLife
Volume 4, Issue -, Pages -
Publisher
eLife Sciences Organisation, Ltd.
Online
2015-04-13
DOI
10.7554/elife.03700
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- How Slow RNA Polymerase II Elongation Favors Alternative Exon Skipping
- (2014) Gwendal Dujardin et al. MOLECULAR CELL
- Diversity and dynamics of the Drosophila transcriptome
- (2014) James B. Brown et al. NATURE
- Genome-guided transcript assembly by integrative analysis of RNA sequence data
- (2014) Nathan Boley et al. NATURE BIOTECHNOLOGY
- Sensitive, multiplex and direct quantification of RNA sequences using a modified RASL assay
- (2014) H. Benjamin Larman et al. NUCLEIC ACIDS RESEARCH
- Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing
- (2014) Barbara Treutlein et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Molecular Basis of Self-Avoidance
- (2013) S. Lawrence Zipursky et al. Annual Review of Neuroscience
- 3′UTRs take a long shot in the brain
- (2013) Li Wang et al. BIOESSAYS
- Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs
- (2013) Laura H. LeGault et al. BIOINFORMATICS
- PEAR: a fast and accurate Illumina Paired-End reAd mergeR
- (2013) J. Zhang et al. BIOINFORMATICS
- Probabilistic Splicing of Dscam1 Establishes Identity at the Level of Single Neurons
- (2013) Satoru K. Miura et al. CELL
- Ultra-deep profiling of alternatively spliced Drosophila Dscam isoforms by circularization-assisted multi-segment sequencing
- (2013) Wei Sun et al. EMBO JOURNAL
- An Ancient Transcription Factor Initiates the Burst of piRNA Production during Early Meiosis in Mouse Testes
- (2013) Xin Zhiguo Li et al. MOLECULAR CELL
- A single-molecule long-read survey of the human transcriptome
- (2013) Donald Sharon et al. NATURE BIOTECHNOLOGY
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- Efficient DNA ligation in DNA–RNA hybrid helices by Chlorella virus DNA ligase
- (2013) Gregory J. S. Lohman et al. NUCLEIC ACIDS RESEARCH
- Kinetic mechanism of nick sealing by T4 RNA ligase 2 and effects of 3'-OH base mispairs and damaged base lesions
- (2013) M. Chauleau et al. RNA
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- A Multi-Exon-Skipping Detection Assay Reveals Surprising Diversity of Splice Isoforms of Spinal Muscular Atrophy Genes
- (2012) Natalia N. Singh et al. PLoS One
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Computational methods for transcriptome annotation and quantification using RNA-seq
- (2011) Manuel Garber et al. NATURE METHODS
- T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
- (2011) P. Di Tommaso et al. NUCLEIC ACIDS RESEARCH
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- RNAstructure: software for RNA secondary structure prediction and analysis
- (2010) Jessica S Reuter et al. BMC BIOINFORMATICS
- Single molecule analysis of combinatorial splicing
- (2010) Tim Conze et al. NUCLEIC ACIDS RESEARCH
- Apparent Non-Canonical Trans-Splicing Is Generated by Reverse Transcriptase In Vitro
- (2010) Jonathan Houseley et al. PLoS One
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Jalview Version 2--a multiple sequence alignment editor and analysis workbench
- (2009) A. M. Waterhouse et al. BIOINFORMATICS
- Robust discrimination between self and non-self neurites requires thousands of Dscam1 isoforms
- (2009) Daisuke Hattori et al. NATURE
- Massive expansions of Dscam splicing diversity via staggered homologous recombination during arthropod evolution
- (2009) C. Lee et al. RNA
- Alternative Splicing of CD45: The Tip of the Iceberg
- (2008) Julie Zikherman et al. IMMUNITY
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
- (2008) Qun Pan et al. NATURE GENETICS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started