Non-allelic gene conversion enables rapid evolutionary change at multiple regulatory sites encoded by transposable elements

Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila

(2013) A. A. Alekseyenko et al.   GENES & DEVELOPMENT

Dosage Compensation via Transposable Element Mediated Rewiring of a Regulatory Network

(2013) C. E. Ellison et al.   SCIENCE

The Epigenome of Evolving Drosophila Neo-Sex Chromosomes: Dosage Compensation and Heterochromatin Formation

(2013) Qi Zhou et al.   PLOS BIOLOGY

Transposable Elements Re-Wire and Fine-Tune the Transcriptome

(2013) Michael Cowley et al.   PLoS Genetics

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Why Transcription Factor Binding Sites Are Ten Nucleotides Long

(2012) A. J. Stewart et al.   GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Genome destabilization by homologous recombination in the germ line

(2010) Mariko Sasaki et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Gene Conversion and Evolution of Gene Families: An Overview

(2010) Tomoko Ohta   Genes

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

The Power of the Methods for Detecting Interlocus Gene Conversion

(2009) S. P. Mansai et al.   GENETICS

Fast Statistical Alignment

(2009) Robert K. Bradley et al.   PLoS Computational Biology

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA

(2008) Nalini Polavarapu et al.   BMC GENOMICS

A Sequence Motif within Chromatin Entry Sites Directs MSL Establishment on the Drosophila X Chromosome

(2008) Artyom A. Alekseyenko et al.   CELL

The Evolutionary Rate of Duplicated Genes Under Concerted Evolution

(2008) S. Mano et al.   GENETICS

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE

Transposable elements and the evolution of regulatory networks

(2008) Cédric Feschotte   NATURE REVIEWS GENETICS

The Chromosomal High-Affinity Binding Sites for the Drosophila Dosage Compensation Complex

(2008) Tobias Straub et al.   PLoS Genetics