Detecting Protein-Protein Interactions with a Novel Matrix-Based Protein Sequence Representation and Support Vector Machines

A MapReduce based parallel SVM for large-scale predicting protein–protein interactions

(2014) Zhu-Hong You et al.   NEUROCOMPUTING

Large-Scale Protein-Protein Interactions Detection by Integrating Big Biosensing Data with Computational Model

(2014) Zhu-Hong You et al.   Biomed Research International

Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis

(2013) Zhu-Hong You et al.   BMC BIOINFORMATICS

Software for weighted structured low-rank approximation

(2013) Ivan Markovsky et al.   JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

Structure-based prediction of protein–protein interactions on a genome-wide scale

(2012) Qiangfeng Cliff Zhang et al.   NATURE

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

(2011) Y. Yang et al.   BIOINFORMATICS

Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data

(2010) Z.-H. You et al.   BIOINFORMATICS

A novel 2D graphical representation of protein sequence based on individual amino acid

(2010) Jia-Feng Yu et al.   INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY

Large-Scale Prediction of Human Protein−Protein Interactions from Amino Acid Sequence Based on Latent Topic Features

(2010) Xiao-Yong Pan et al.   JOURNAL OF PROTEOME RESEARCH

Prediction of Protein-Protein Interactions from Protein Sequence Using Local Descriptors

(2010) Lei Yang et al.   PROTEIN AND PEPTIDE LETTERS

Predicting protein–protein interactions from sequence using correlation coefficient and high-quality interaction dataset

(2009) Ming-Guang Shi et al.   AMINO ACIDS

TN curve: A novel 3D graphical representation of DNA sequence based on trinucleotides and its applications

(2009) Jia-Feng Yu et al.   JOURNAL OF THEORETICAL BIOLOGY

Protein function prediction with high-throughput data

(2008) Xing-Ming Zhao et al.   AMINO ACIDS

Gene function prediction using labeled and unlabeled data

(2008) Xing-Ming Zhao et al.   BMC BIOINFORMATICS

The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition

(2008) Hao Lin   JOURNAL OF THEORETICAL BIOLOGY

Using support vector machine combined with auto covariance to predict protein–protein interactions from protein sequences

(2008) Yanzhi Guo et al.   NUCLEIC ACIDS RESEARCH

Protein domain annotation with integration of heterogeneous information sources

(2008) Xing-Ming Zhao et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Specific interactions for ab initio folding of protein terminal regions with secondary structures

(2008) Yuedong Yang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS