Gene Knockout Identification Using an Extension of Bees Hill Flux Balance Analysis

Identification of Metabolic Engineering Targets through Analysis of Optimal and Sub-Optimal Routes

(2013) Zita I. T. A. Soons et al.   PLoS One

An Improved Swarm Optimization for Parameter Estimation and Biological Model Selection

(2013) Afnizanfaizal Abdullah et al.   PLoS One

Truncated branch and bound achieves efficient constraint-based genetic design

(2012) Dennis Egen et al.   BIOINFORMATICS

Robust design of microbial strains

(2012) Jole Costanza et al.   BIOINFORMATICS

Effects of deletion of glycerol-3-phosphate dehydrogenase and glutamate dehydrogenase genes on glycerol and ethanol metabolism in recombinant Saccharomyces cerevisiae

(2011) Jin-Woo Kim et al.   BIOPROCESS AND BIOSYSTEMS ENGINEERING

A computational tool for the simulation and optimization of microbial strains accounting integrated metabolic/regulatory information

(2010) Paulo Vilaça et al.   BIOSYSTEMS

Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production

(2010) Seth B Roberts et al.   BMC Systems Biology

Genetic modification of flux for flux prediction of mutants

(2009) Quanyu Zhao et al.   BIOINFORMATICS

iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations

(2009) Christopher S Henry et al.   GENOME BIOLOGY

Natural computation meta-heuristics for the in silico optimization of microbial strains

(2008) Miguel Rocha et al.   BMC BIOINFORMATICS

Computational Cell Biology: Second Theme Issue on “Computational Biology”

(2008) Wolfgang Alt et al.   JOURNAL OF MATHEMATICAL BIOLOGY