HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes

Identification of horizontally transferred genes in the genus Colletotrichum reveals a steady tempo of bacterial to fungal gene transfer

(2015) Vinicio D Armijos Jaramillo et al.   BMC GENOMICS

Lateral gene transfers and the origins of the eukaryote proteome: a view from microbial parasites

(2015) Robert P Hirt et al.   CURRENT OPINION IN MICROBIOLOGY

Endosymbiotic origin and differential loss of eukaryotic genes

(2015) Chuan Ku et al.   NATURE

Fungal metabolic gene clusters—caravans traveling across genomes and environments

(2015) Jennifer H. Wisecaver et al.   Frontiers in Microbiology

Horizontal Gene Transfer in Eukaryotic Plant Pathogens

(2014) Darren Soanes et al.   Annual Review of Phytopathology

HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers

(2014) Qiyun Zhu et al.   BMC GENOMICS

Frequent, independent transfers of a catabolic gene from bacteria to contrasted filamentous eukaryotes

(2014) M. Bruto et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Evolution of Fungal Metabolic Pathways

(2014) Jennifer H. Wisecaver et al.   PLoS Genetics

Antibacterial gene transfer across the tree of life

(2014) Jason A Metcalf et al.   eLife

Horizontal gene acquisitions by eukaryotes as drivers of adaptive evolution

(2013) Gerald Schönknecht et al.   BIOESSAYS

RCircos: an R package for Circos 2D track plots

(2013) Hongen Zhang et al.   BMC BIOINFORMATICS

Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae

(2013) Diane O Inglis et al.   BMC MICROBIOLOGY

Horizontal gene transfer in osmotrophs: playing with public goods

(2013) Thomas A. Richards et al.   NATURE REVIEWS MICROBIOLOGY

MycoCosm portal: gearing up for 1000 fungal genomes

(2013) Igor V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

Extensive Intra-Kingdom Horizontal Gene Transfer Converging on a Fungal Fructose Transporter Gene

(2013) Marco A. Coelho et al.   PLoS Genetics

Horizontal Transfer and Death of a Fungal Secondary Metabolic Gene Cluster

(2012) Matthew A. Campbell et al.   Genome Biology and Evolution

Recurrent Horizontal Transfer of Bacterial Toxin Genes to Eukaryotes

(2012) Y. Moran et al.   MOLECULAR BIOLOGY AND EVOLUTION

Horizontal gene transfers as metagenomic gene duplications

(2012) Luigi Grassi et al.   Molecular BioSystems

Phylogenetic and Functional Analysis of Aspergillus fumigatus MGTC, a Fungal Protein Homologous to a Bacterial Virulence Factor

(2011) Amandine Gastebois et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover

(2011) Werner E Mayer et al.   BMC EVOLUTIONARY BIOLOGY

Horizontal gene transfer in fungi

(2011) David A. Fitzpatrick   FEMS MICROBIOLOGY LETTERS

Ecology drives a global network of gene exchange connecting the human microbiome

(2011) Chris S. Smillie et al.   NATURE

Biased gene transfer in microbial evolution

(2011) Cheryl P. Andam et al.   NATURE REVIEWS MICROBIOLOGY

Gene transfer into the fungi

(2011) Thomas A. Richards et al.   Fungal Biology Reviews

Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus

(2010) Ludovic V Mallet et al.   BMC GENOMICS

Horizontal Transfer of a Large and Highly Toxic Secondary Metabolic Gene Cluster between Fungi

(2010) Jason C. Slot et al.   CURRENT BIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi

(2010) J. C. Slot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How does multiple testing correction work?

(2009) William S Noble   NATURE BIOTECHNOLOGY

Acquisition of prokaryotic genes by fungal genomes

(2009) Marina Marcet-Houben et al.   TRENDS IN GENETICS

The transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes

(2009) John W Whitaker et al.   GENOME BIOLOGY

Horizontal gene transfer in eukaryotic evolution

(2008) Patrick J. Keeling et al.   NATURE REVIEWS GENETICS