piRNAs Are Associated with Diverse Transgenerational Effects on Gene and Transposon Expression in a Hybrid Dysgenic Syndrome of D. virilis

The Architecture of Parent-of-Origin Effects in Mice

(2014) Richard Mott et al.   CELL

Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing

(2014) Adrien Le Thomas et al.   GENES & DEVELOPMENT

RNA-seq Reveals Transcriptomic Shock Involving Transposable Elements Reactivation in Hybrids of Young Lake Whitefish Species

(2014) Anne-Marie Dion-Côté et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Genome-Wide Survey of Genetic Instability by Transposition in Drosophila Hybrids

(2014) Doris Vela et al.   PLoS One

A Transgenerational Process Defines piRNA Biogenesis in Drosophila virilis

(2014) Adrien Le Thomas et al.   Cell Reports

Euchromatic Transposon Insertions Trigger Production of Novel Pi- and Endo-siRNAs at the Target Sites in the Drosophila Germline

(2014) Sergey Shpiz et al.   PLoS Genetics

Whole genome sequencing in Drosophila virilis identifies Polyphemus, a recently activated Tc1-like transposon with a possible role in hybrid dysgenesis

(2014) Justin P Blumenstiel   Mobile DNA

Maternal enhancement of cytotype regulation in Drosophila melanogaster by genetic interactions between telomeric P elements and non-telomeric transgenic P elements

(2013) MICHAEL J. SIMMONS et al.   Genetics Research

A Transcriptome-wide RNAi Screen in the Drosophila Ovary Reveals Factors of the Germline piRNA Pathway

(2013) Benjamin Czech et al.   MOLECULAR CELL

De novo piRNA cluster formation in the Drosophila germ line triggered by transgenes containing a transcribed transposon fragment

(2013) Ivan Olovnikov et al.   NUCLEIC ACIDS RESEARCH

Maternal Depletion of Piwi, a Component of the RNAi System, Impacts Heterochromatin Formation in Drosophila

(2013) Tingting Gu et al.   PLoS Genetics

Transcriptional Silencing of Transposons by Piwi and Maelstrom and Its Impact on Chromatin State and Gene Expression

(2012) Grzegorz Sienski et al.   CELL

UAP56 Couples piRNA Clusters to the Perinuclear Transposon Silencing Machinery

(2012) Fan Zhang et al.   CELL

RECURRENT AND RECENT SELECTIVE SWEEPS IN THE piRNA PATHWAY

(2012) Alfred Simkin et al.   EVOLUTION

piRNA-mediated transgenerational inheritance of an acquired trait

(2012) T. Grentzinger et al.   GENOME RESEARCH

A Critical Assessment of Storytelling: Gene Ontology Categories and the Importance of Validating Genomic Scans

(2012) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution and Dynamics of Small RNA Response to a Retroelement Invasion in Drosophila

(2012) N. V. Rozhkov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Paramutation in Drosophila linked to emergence of a piRNA-producing locus

(2012) Augustin de Vanssay et al.   NATURE

Ectopic assembly of heterochromatin in Drosophila melanogaster triggered by transposable elements

(2012) M. F. Sentmanat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Drosophila Interspecific Hybrids Phenocopy piRNA-Pathway Mutants

(2012) Erin S. Kelleher et al.   PLOS BIOLOGY

Adaptation to P Element Transposon Invasion in Drosophila melanogaster

(2011) Jaspreet S. Khurana et al.   CELL

Mechanism of the piRNA-mediated silencing of Drosophila telomeric retrotransposons

(2011) Sergey Shpiz et al.   NUCLEIC ACIDS RESEARCH

Expression of Drosophila virilis Retroelements and Role of Small RNAs in Their Intrastrain Transposition

(2011) Nikolay V. Rozhkov et al.   PLoS One

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Recurrent Adaptation in RNA Interference Genes Across the Drosophila Phylogeny

(2010) B. Kolaczkowski et al.   MOLECULAR BIOLOGY AND EVOLUTION

RNA-mediated trans-communication can establish paramutation at the b1 locus in maize

(2010) M. Arteaga-Vazquez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNA-based silencing strategies for transposons in the process of invading Drosophila species

(2010) N. V. Rozhkov et al.   RNA

Distinct Functions for the Drosophila piRNA Pathway in Genome Maintenance and Telomere Protection

(2010) Jaspreet S. Khurana et al.   PLoS Genetics

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Signaling to p53: Ribosomal Proteins Find Their Way

(2009) Yanping Zhang et al.   CANCER CELL

Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary

(2009) Colin D. Malone et al.   CELL

Collapse of Germline piRNAs in the Absence of Argonaute3 Reveals Somatic piRNAs in Flies

(2009) Chengjian Li et al.   CELL

Identification of EMS-Induced Mutations in Drosophila melanogaster by Whole-Genome Sequencing

(2009) J. P. Blumenstiel et al.   GENETICS

The evolution of RNAi as a defence against viruses and transposable elements

(2008) D. J Obbard et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

piRNA-mediated nuclear accumulation of retrotransposon transcripts in the Drosophila female germline

(2008) S. Chambeyron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing

(2008) J. Brennecke et al.   SCIENCE