Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae)

Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae

(2015) Heather M Hunsperger et al.   BMC EVOLUTIONARY BIOLOGY

The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles

(2014) Blake T Hovde et al.   BMC GENOMICS

A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes

(2014) Shawn R Starkenburg et al.   BMC GENOMICS

Multidrug Transport Protein NorM fromVibrio choleraeSimultaneously Couples to Sodium- and Proton-Motive Force

(2014) Yoonhee Jin et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Deep-branching Novel Lineages and High Diversity of Haptophytes in the Skagerrak (Norway) Uncovered by 454 Pyrosequencing

(2014) Elianne S. Egge et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Comparative Transcriptome Analysis of Four Prymnesiophyte Algae

(2014) Amy E. Koid et al.   PLoS One

Light-Promoted Rhodopsin Expression and Starvation Survival in the Marine Dinoflagellate Oxyrrhis marina

(2014) Zhiling Guo et al.   PLoS One

Nature's toolkit for microbial rhodopsin ion pumps

(2014) O. Beja et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolution of photosynthesis in chromist algae through serial endosymbioses

(2014) John W. Stiller et al.   Nature Communications

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

Nannochloropsis Genomes Reveal Evolution of Microalgal Oleaginous Traits

(2014) Dongmei Wang et al.   PLoS Genetics

Proteorhodopsin

(2013) Christian Bamann et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

A global perspective on marine photosynthetic picoeukaryote community structure

(2013) Amy R Kirkham et al.   ISME Journal

Pan genome of the phytoplankton Emiliania underpins its global distribution

(2013) Betsy A. Read et al.   NATURE

A PKS/NRPS/FAS Hybrid Gene Cluster from Serratia plymuthica RVH1 Encoding the Biosynthesis of Three Broad Spectrum, Zeamine-Related Antibiotics

(2013) Joleen Masschelein et al.   PLoS One

Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein

(2013) Thomas Riedel et al.   PLoS One

Metabolic engineering of lipid catabolism increases microalgal lipid accumulation without compromising growth

(2013) E. M. Trentacoste et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biosynthesis of natural products by microbial iterative hybrid PKS–NRPS

(2013) Katja Maria Fisch   RSC Advances

Chrysochromulina sp.: A proposed lipid standard for the algal biofuel industry and its application to diverse taxa for screening lipid content

(2013) Nicholas Bigelow et al.   Algal Research-Biomass Biofuels and Bioproducts

Antibacterial substances from marine algae isolated from Jeddah coast of Red sea, Saudi Arabia

(2013) Sarah Saleh Abdu-llah Al-Saif et al.   SAUDI JOURNAL OF BIOLOGICAL SCIENCES

Mechanism and Diversity of the Erythromycin Esterase Family of Enzymes

(2012) Mariya Morar et al.   BIOCHEMISTRY

Discovering New In Silico Tools for Antimicrobial Peptide Prediction

(2012) Marc Torrent et al.   CURRENT DRUG TARGETS

Mutualistic interactions between vitamin B12-dependent algae and heterotrophic bacteria exhibit regulation

(2012) Elena Kazamia et al.   ENVIRONMENTAL MICROBIOLOGY

Cyanobacterial-based approaches to improving photosynthesis in plants

(2012) Jan Zarzycki et al.   JOURNAL OF EXPERIMENTAL BOTANY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay

(2012) Lucie Bittner et al.   MOLECULAR ECOLOGY

The Escherichia coli SOS Gene dinF Protects against Oxidative Stress and Bile Salts

(2012) Jerónimo Rodríguez-Beltrán et al.   PLoS One

Adjusted Light and Dark Cycles Can Optimize Photosynthetic Efficiency in Algae Growing in Photobioreactors

(2012) Eleonora Sforza et al.   PLoS One

New haptophyte lineages and multiple independent colonizations of freshwater ecosystems

(2012) Marianne Simon et al.   Environmental Microbiology Reports

Avogadro: an advanced semantic chemical editor, visualization, and analysis platform

(2012) Marcus D Hanwell et al.   Journal of Cheminformatics

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Ribosomal DNA phylogenies and a morphological revision provide the basis for a revised taxonomy of the Prymnesiales (Haptophyta)

(2011) Bente Edvardsen et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Complex repeat structures and novel features in the mitochondrial genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana

(2011) Marie-Pierre Oudot-Le Secq et al.   GENE

Marine-Freshwater Colonizations of Haptophytes Inferred from Phylogeny of Environmental 18S rDNA Sequences

(2011) KAMRAN SHALCHIAN-TABRIZI et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

A Comprehensive GC-MS Sub-Microscale Assay for Fatty Acids and its Applications

(2011) Nicholas W. Bigelow et al.   JOURNAL OF THE AMERICAN OIL CHEMISTS SOCIETY

Insights into the Evolution of Vitamin B12 Auxotrophy from Sequenced Algal Genomes

(2011) K. E. Helliwell et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structure and function of the AAA+ protein CbbX, a red-type Rubisco activase

(2011) Oliver Mueller-Cajar et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance

(2011) Xinli Sun et al.   NEW PHYTOLOGIST

Fusarin C acts like an estrogenic agonist and stimulates breast cancer cells in vitro

(2011) T.E. Sondergaard et al.   TOXICOLOGY LETTERS

A bacterial proteorhodopsin proton pump in marine eukaryotes

(2011) Claudio H. Slamovits et al.   Nature Communications

Experimental studies on dimethylsulfide (DMS) and dimethylsulfoniopropionate (DMSP) production by four marine microalgae

(2010) Chengxuan Li et al.   ACTA OCEANOLOGICA SINICA

Dinoflagellate Genome Evolution

(2010) Jennifer H. Wisecaver et al.   Annual Review of Microbiology

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

Genetic Engineering of Algae for Enhanced Biofuel Production

(2010) Randor Radakovits et al.   EUKARYOTIC CELL

Genomic characterisation of the ichthyotoxic prymnesiophyteChrysochromulina polylepis,and the expression of polyketide synthase genes in synchronized cultures

(2010) Uwe John et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Prymnesins: Toxic Metabolites of the Golden Alga, Prymnesium parvum Carter (Haptophyta)

(2010) Schonna R. Manning et al.   Marine Drugs

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Accurate quantification of transcriptome from RNA-Seq data by effective length normalization

(2010) Soohyun Lee et al.   NUCLEIC ACIDS RESEARCH

Advancing Our Understanding and Capacity to Engineer Nature's CO2-Sequestering Enzyme, Rubisco

(2010) S. M. Whitney et al.   PLANT PHYSIOLOGY

Microalgae: a sustainable feed source for aquaculture

(2010) S. Hemaiswarya et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

CAMP: a useful resource for research on antimicrobial peptides

(2009) Shaini Thomas et al.   NUCLEIC ACIDS RESEARCH

Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans

(2009) H. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure prediction for CASP8 with all-atom refinement using Rosetta

(2009) Srivatsan Raman et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Complete Sequence and Analysis of the Mitochondrial Genome of Hemiselmis andersenii CCMP644 (Cryptophyceae)

(2008) Eunsoo Kim et al.   BMC GENOMICS

Functional analysis of the plastid and nuclear encoded CbbX proteins of Cyanidioschyzon merolae

(2008) Kiyohito Fujita et al.   GENES & GENETIC SYSTEMS

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

RosettaLigand Docking with Full Ligand and Receptor Flexibility

(2008) Ian W. Davis et al.   JOURNAL OF MOLECULAR BIOLOGY

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances

(2008) Qiang Hu et al.   PLANT JOURNAL

Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore

(2008) H. Luecke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A molecular clock for coccolithophores and implications for selectivity of phytoplankton extinctions across the K/T boundary

(2007) L.K. Medlin et al.   MARINE MICROPALEONTOLOGY