Gene Prioritization by Compressive Data Fusion and Chaining

Data Fusion by Matrix Factorization

(2015) Marinka Zitnik et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Similarity network fusion for aggregating data types on a genomic scale

(2014) Bo Wang et al.   NATURE METHODS

Bacterial Discrimination by Dictyostelid Amoebae Reveals the Complexity of Ancient Interspecies Interactions

(2013) Waleed Nasser et al.   CURRENT BIOLOGY

eXtasy: variant prioritization by genomic data fusion

(2013) Alejandro Sifrim et al.   NATURE METHODS

The Reactome pathway knowledgebase

(2013) David Croft et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

ABC Transporters in Dictyostelium discoideum Development

(2013) Edward Roshan Miranda et al.   PLoS One

Discovering disease-disease associations by fusing systems-level molecular data

(2013) Marinka Žitnik et al.   Scientific Reports

Computational tools for prioritizing candidate genes: boosting disease gene discovery

(2012) Yves Moreau et al.   NATURE REVIEWS GENETICS

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Combining many interaction networks to predict gene function and analyze gene lists

(2012) Sara Mostafavi et al.   PROTEOMICS

The Professional Phagocyte Dictyostelium discoideum as a Model Host for Bacterial Pathogens

(2011) Salvatore Bozzaro et al.   CURRENT DRUG TARGETS

Génie: literature-based gene prioritization at multi genomic scale

(2011) Jean-Fred Fontaine et al.   NUCLEIC ACIDS RESEARCH

Improving disease gene prioritization using the semantic similarity of Gene Ontology terms

(2010) Andreas Schlicker et al.   BIOINFORMATICS

Gene prioritization and clustering by multi-view text mining

(2010) Shi Yu et al.   BMC BIOINFORMATICS

Gene prioritization in Type 2 Diabetes using domain interactions and network analysis

(2010) Amitabh Sharma et al.   BMC GENOMICS

Unconventional Secretion of AcbA in Dictyostelium discoideum through a Vesicular Intermediate

(2010) Matthew Cabral et al.   EUKARYOTIC CELL

Conserved developmental transcriptomes in evolutionarily divergent species

(2010) Anup Parikh et al.   GENOME BIOLOGY

A multi-dimensional evidence-based candidate gene prioritization approach for complex diseases–schizophrenia as a case

(2009) Jingchun Sun et al.   BIOINFORMATICS

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

(2009) J. Chen et al.   NUCLEIC ACIDS RESEARCH

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

dictyBase—a Dictyostelium bioinformatics resource update

(2008) Petra Fey et al.   NUCLEIC ACIDS RESEARCH

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

(2008) Sara Mostafavi et al.   GENOME BIOLOGY