AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility

Side-chain rotamer changes upon ligand binding: common, crucial, correlate with entropy and rearrange hydrogen bonding

(2012) F. Gaudreault et al.   BIOINFORMATICS

GalaxyDock: Protein–Ligand Docking with Flexible Protein Side-chains

(2012) Woong-Hee Shin et al.   Journal of Chemical Information and Modeling

How Good Are State-of-the-Art Docking Tools in Predicting Ligand Binding Modes in Protein–Protein Interfaces?

(2012) Dennis M. Krüger et al.   Journal of Chemical Information and Modeling

Protein flexibility in docking and surface mapping

(2012) Katrina W. Lexa et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Successful Applications of Computer Aided Drug Discovery: Moving Drugs from Concept to the Clinic

(2010) Tanaji Talele et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Advances and Challenges in Protein-Ligand Docking

(2010) Sheng-You Huang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Elastic Potential Grids: Accurate and Efficient Representation of Intermolecular Interactions for Fully Flexible Docking

(2009) Sina Kazemi et al.   ChemMedChem

Blind docking of 260 protein-ligand complexes with EADock 2.0

(2009) Aurélien Grosdidier et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility

(2009) Garrett M. Morris et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Blind docking of pharmaceutically relevant compounds using RosettaLigand

(2009) Ian W. Davis et al.   PROTEIN SCIENCE

Docking Ligands into Flexible and Solvated Macromolecules. 2. Development and Application of Fitted1.5 to the Virtual Screening of Potential HCV Polymerase Inhibitors

(2008) Christopher R. Corbeil et al.   Journal of Chemical Information and Modeling

Protein−Ligand Docking Accounting for Receptor Side Chain and Global Flexibility in Normal Modes: Evaluation on Kinase Inhibitor Cross Docking

(2008) Andreas May et al.   JOURNAL OF MEDICINAL CHEMISTRY

RosettaLigand Docking with Full Ligand and Receptor Flexibility

(2008) Ian W. Davis et al.   JOURNAL OF MOLECULAR BIOLOGY

Current topics in computer‐aided drug design

(2008) Carlton A. Taft et al.   JOURNAL OF PHARMACEUTICAL SCIENCES