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Title
TRANSIT - A Software Tool for Himar1 TnSeq Analysis
Authors
Keywords
Glycerol, Hidden Markov models, Genomic libraries, Cholesterol, Genomic library construction, Comparative genomics, Transposable elements, Genome analysis
Journal
PLoS Computational Biology
Volume 11, Issue 10, Pages e1004401
Publisher
Public Library of Science (PLoS)
Online
2015-10-09
DOI
10.1371/journal.pcbi.1004401
References
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Related references
Note: Only part of the references are listed.- Tn-Seq Explorer: A Tool for Analysis of High-Throughput Sequencing Data of Transposon Mutant Libraries
- (2015) Sina Solaimanpour et al. PLoS One
- ARTIST: High-Resolution Genome-Wide Assessment of Fitness Using Transposon-Insertion Sequencing
- (2014) Justin R. Pritchard et al. PLoS Genetics
- Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries
- (2013) Michael A. DeJesus et al. BIOINFORMATICS
- A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data
- (2013) Michael A DeJesus et al. BMC BIOINFORMATICS
- Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms
- (2013) Tim van Opijnen et al. NATURE REVIEWS MICROBIOLOGY
- A Statistical Framework for Improving Genomic Annotations of Prokaryotic Essential Genes
- (2013) Jingyuan Deng et al. PLoS One
- Approaches to querying bacterial genomes with transposon-insertion sequencing
- (2013) Lars Barquist et al. RNA Biology
- ESSENTIALS: Software for Rapid Analysis of High Throughput Transposon Insertion Sequencing Data
- (2012) Aldert Zomer et al. PLoS One
- Global Assessment of Genomic Regions Required for Growth in Mycobacterium tuberculosis
- (2012) Yanjia J. Zhang et al. PLoS Pathogens
- High-Resolution Phenotypic Profiling Defines Genes Essential for Mycobacterial Growth and Cholesterol Catabolism
- (2011) Jennifer E. Griffin et al. PLoS Pathogens
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Identifying Genetic Determinants Needed to Establish a Human Gut Symbiont in Its Habitat
- (2009) Andrew L. Goodman et al. Cell Host & Microbe
- Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants
- (2009) G. C. Langridge et al. GENOME RESEARCH
- Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms
- (2009) Tim van Opijnen et al. NATURE METHODS
- Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung
- (2009) J. D. Gawronski et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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