Host–Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes

Identifying the Molecular Basis of Host-Parasite Coevolution: Merging Models and Mechanisms

(2014) Mark F. Dybdahl et al.   AMERICAN NATURALIST

Genomic variability as a driver of plant–pathogen coevolution?

(2014) Talia L Karasov et al.   CURRENT OPINION IN PLANT BIOLOGY

MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

(2014) Wan-Ping Lee et al.   PLoS One

Ecological and evolutionary effects of fragmentation on infectious disease dynamics

(2014) J. Jousimo et al.   SCIENCE

Coevolution Drives the Emergence of Complex Traits and Promotes Evolvability

(2014) Luis Zaman et al.   PLOS BIOLOGY

Sex differences in host defence interfere with parasite-mediated selection for outcrossing during host-parasite coevolution

(2013) Leila Masri et al.   ECOLOGY LETTERS

Host-parasite coevolution favours parasite genetic diversity and horizontal gene transfer

(2013) R. D. Schulte et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Sticking together: building a biofilm the Bacillus subtilis way

(2013) Hera Vlamakis et al.   NATURE REVIEWS MICROBIOLOGY

Experimental coevolution of species interactions

(2013) Michael A. Brockhurst et al.   TRENDS IN ECOLOGY & EVOLUTION

Myxomatosis in Australia and Europe: A model for emerging infectious diseases

(2012) Peter J Kerr   ANTIVIRAL RESEARCH

Spatial heterogeneity, frequency-dependent selection and polymorphism in host-parasite interactions

(2012) Aurélien Tellier et al.   BMC EVOLUTIONARY BIOLOGY

How the insect pathogen bacteria Bacillus thuringiensis and Xenorhabdus/Photorhabdus occupy their hosts

(2012) Christina Nielsen-LeRoux et al.   CURRENT OPINION IN MICROBIOLOGY

Evolution of Outcrossing in Experimental Populations of Caenorhabditis elegans

(2012) Henrique Teotonio et al.   PLoS One

Repeatability and Contingency in the Evolution of a Key Innovation in Phage Lambda

(2012) J. R. Meyer et al.   SCIENCE

Evolution ofBacillus thuringiensisCry toxins insecticidal activity

(2012) Alejandra Bravo et al.   Microbial Biotechnology

Increased responsiveness in feeding behaviour of Caenorhabditis elegans after experimental coevolution with its microparasite Bacillus thuringiensis

(2011) R. D. Schulte et al.   Biology Letters

Estimation of allele frequency and association mapping using next-generation sequencing data

(2011) Su Kim et al.   BMC BIOINFORMATICS

Activation of the Caenorhabditis elegans FOXO family transcription factor DAF-16 by pathogenic Bacillus thuringiensis

(2011) Jun Wang et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

(2011) A. Abyzov et al.   GENOME RESEARCH

SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data

(2011) Zhi Wei et al.   NUCLEIC ACIDS RESEARCH

Host-parasite local adaptation after experimental coevolution of Caenorhabditis elegans and its microparasite Bacillus thuringiensis

(2011) R. D. Schulte et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Running with the Red Queen: Host-Parasite Coevolution Selects for Biparental Sex

(2011) L. T. Morran et al.   SCIENCE

Ongoing Phenotypic and Genomic Changes in Experimental Coevolution of RNA Bacteriophage Qβ and Escherichia coli

(2011) Akiko Kashiwagi et al.   PLoS Genetics

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Cutting Edge: Mutation of Francisella tularensis mviN Leads to Increased Macrophage Absent in Melanoma 2 Inflammasome Activation and a Loss of Virulence

(2010) T. K. Ulland et al.   JOURNAL OF IMMUNOLOGY

Genetic basis of infectivity evolution in a bacteriophage

(2010) PAULINE D. SCANLAN et al.   MOLECULAR ECOLOGY

Antagonistic coevolution accelerates molecular evolution

(2010) Steve Paterson et al.   NATURE

Plant immunity: towards an integrated view of plant–pathogen interactions

(2010) Peter N. Dodds et al.   NATURE REVIEWS GENETICS

Beneficial mutations and the dynamics of adaptation in asexual populations

(2010) P. D. Sniegowski et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Multiple reciprocal adaptations and rapid genetic change upon experimental coevolution of an animal host and its microbial parasite

(2010) R. D. Schulte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biofilms

(2010) D. Lopez et al.   Cold Spring Harbor Perspectives in Biology

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

(2009) K. Ye et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The Geographic Mosaic of Sex and the Red Queen

(2009) Kayla C. King et al.   CURRENT BIOLOGY

Sensitive and accurate detection of copy number variants using read depth of coverage

(2009) S. Yoon et al.   GENOME RESEARCH

Elaboration of an electroporation protocol for large plasmids and wild-type strains ofBacillus thuringiensis

(2009) D. Peng et al.   JOURNAL OF APPLIED MICROBIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Host–parasite coevolution: Insights from the Daphnia–parasite model system

(2008) Dieter Ebert   CURRENT OPINION IN MICROBIOLOGY

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE