Transcriptome and Proteome Research in Veterinary Science: What Is Possible and What Questions Can Be Asked?

Is There a Malignant Progression Associated with a Linear Change in Protein Expression Levels from Normal Canine Mammary Gland to Metastatic Mammary Tumors?

(2011) Patricia Klose et al.   JOURNAL OF PROTEOME RESEARCH

Metastatic canine mammary carcinomas can be identified by a gene expression profile that partly overlaps with human breast cancer profiles

(2010) Robert Klopfleisch et al.   BMC CANCER

Proteome of Metastatic Canine Mammary Carcinomas: Similarities to and Differences from Human Breast Cancer†

(2010) Robert Klopfleisch et al.   JOURNAL OF PROTEOME RESEARCH

Proteome analysis of mouse model systems: A tool to model human disease and for the investigation of tissue-specific biology

(2010) Thomas Kislinger et al.   Journal of Proteomics

Advances in shotgun proteomics and the analysis of membrane proteomes

(2010) Joshua M. Gilmore et al.   Journal of Proteomics

Advances in understanding cancer genomes through second-generation sequencing

(2010) Matthew Meyerson et al.   NATURE REVIEWS GENETICS

Biomarkers in veterinary cancer screening: Applications, limitations and expectations

(2010) Carolyn J. Henry   VETERINARY JOURNAL

The metastatic cascade is reflected in the transcriptome of metastatic canine mammary carcinomas

(2010) R. Klopfleisch et al.   VETERINARY JOURNAL

The Combined Expression Pattern of BMP2, LTBP4, and DERL1 Discriminates Malignant From Benign Canine Mammary Tumors

(2010) R. Klopfleisch et al.   VETERINARY PATHOLOGY

Increasing the specificity and function of DNA microarrays by processing arrays at different stringencies

(2009) Martin Dufva et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Unlocking the bovine genome

(2009) Ross L Tellam et al.   BMC GENOMICS

Comparative expression pathway analysis of human and canine mammary tumors

(2009) Paolo Uva et al.   BMC GENOMICS

Reproducibility of quantitative RT-PCR array in miRNA expression profiling and comparison with microarray analysis

(2009) Yongxin Chen et al.   BMC GENOMICS

Multidimensional protein identification technology for clinical proteomic analysis

(2009) Pierluigi Mauri et al.   CLINICAL CHEMISTRY AND LABORATORY MEDICINE

Offline and Online Liquid Chromatography Mass Spectrometry in Quantitative Proteomics

(2009) Jessica Bereszczak et al.   COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING

Influence of image-analysis software on quantitation of two-dimensional gel electrophoresis data

(2009) Martina Stessl et al.   ELECTROPHORESIS

Derlin-1 and Stanniocalcin-1 are Differentially Regulated in Metastasizing Canine Mammary Adenocarcinomas

(2009) R. Klopfleisch et al.   JOURNAL OF COMPARATIVE PATHOLOGY

A Human Proteome Detection and Quantitation Project

(2009) N. Leigh Anderson et al.   MOLECULAR & CELLULAR PROTEOMICS

Transcriptome sequencing to detect gene fusions in cancer

(2009) Christopher A. Maher et al.   NATURE

Differential expression of cell cycle regulators p21, p27 and p53 in metastasizing canine mammary adenocarcinomas versus normal mammary glands

(2009) R. Klopfleisch et al.   RESEARCH IN VETERINARY SCIENCE

Increased Expression of BRCA2 and RAD51 in Lymph Node Metastases of Canine Mammary Adenocarcinomas

(2009) R. Klopfleisch et al.   VETERINARY PATHOLOGY

cDNA microarray profiles of canine mammary tumour cell lines reveal deregulated pathways pertaining to their phenotype

(2008) N. A. S. Rao et al.   ANIMAL GENETICS

Next-Generation DNA Sequencing Methods

(2008) Elaine R. Mardis   Annual Review of Genomics and Human Genetics

Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing

(2008) Ryan D. Morin et al.   BIOTECHNIQUES

miR-Q: a novel quantitative RT-PCR approach for the expression profiling of small RNA molecules such as miRNAs in a complex sample

(2008) Soroush Sharbati-Tehrani et al.   BMC MOLECULAR BIOLOGY

Protein Quantitation through Targeted Mass Spectrometry: The Way Out of Biomarker Purgatory?

(2008) S. A. Carr et al.   CLINICAL CHEMISTRY

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

(2008) A. Valouev et al.   GENOME RESEARCH

High Quality Catalog of Proteotypic Peptides from Human Heart

(2008) Kelli G. Kline et al.   JOURNAL OF PROTEOME RESEARCH

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

The complete genome of an individual by massively parallel DNA sequencing

(2008) David A. Wheeler et al.   NATURE

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

(2008) Timothy J. Ley et al.   NATURE

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

(2008) Brian T. Wilhelm et al.   NATURE

Stem cell transcriptome profiling via massive-scale mRNA sequencing

(2008) Nicole Cloonan et al.   NATURE METHODS

The beginning of the end for microarrays?

(2008) Jay Shendure   NATURE METHODS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Helicos BioSciences

(2008) Patrice Milos   PHARMACOGENOMICS

Using Microarray Analysis as a Prognostic and Predictive Tool in Oncology: Focus on Breast Cancer and Normal Tissue Toxicity

(2008) Dimitry S.A. Nuyten et al.   SEMINARS IN RADIATION ONCOLOGY

Serum biomarker profiling in cancer studies: a question of standardisation?

(2008) B. Matharoo-Ball et al.   Veterinary and Comparative Oncology

Strategies for discovering novel cancer biomarkers through utilization of emerging technologies

(2008) Vathany Kulasingam et al.   Nature clinical practice. Oncology