Next-generation sequencing based genotyping, cytometry and phenotyping for understanding diversity and evolution of guinea yams

Clonal diversity and estimation of relative clone age: application to agrobiodiversity of yam (Dioscorea rotundata)

(2013) Nora Scarcelli et al.   BMC PLANT BIOLOGY

Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

(2013) Jennifer Spindel et al.   THEORETICAL AND APPLIED GENETICS

Where Have All the Crop Phenotypes Gone?

(2013) Dani Zamir   PLOS BIOLOGY

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

(2013) Fei Lu et al.   PLoS Genetics

Genetic diversity and population structure of Guinea yams and their wild relatives in South and South West Ethiopia as revealed by microsatellite markers

(2012) Wendawek Abebe Mengesha et al.   GENETIC RESOURCES AND CROP EVOLUTION

Inheritance pattern of tetraploid Dioscorea alata and evidence of double reduction using microsatellite marker segregation analysis

(2012) A. Nemorin et al.   MOLECULAR BREEDING

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

(2012) G. P. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genotyping-by-Sequencing for Plant Breeding and Genetics

(2012) Jesse A. Poland et al.   Plant Genome

Genomic Selection in Wheat Breeding using Genotyping-by-Sequencing

(2012) Jesse Poland et al.   Plant Genome

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell

(2010) T. Junier et al.   BIOINFORMATICS

DensiTree: making sense of sets of phylogenetic trees

(2010) R. R. Bouckaert   BIOINFORMATICS

Impact of farmer selection on yam genetic diversity

(2010) H. Chaïr et al.   CONSERVATION GENETICS

Scenarios of the old industrial regions’ development: selecting the methodology

(2010) Valentine Vishnevsky et al.   ENVIRONMENT DEVELOPMENT AND SUSTAINABILITY

Ploidy level studies on the Dioscorea cayenensis/Dioscorea rotundata complex core set

(2009) J. Obidiegwu et al.   EUPHYTICA

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS