Identification of high-quality single-nucleotide polymorphisms in Glycine latifolia using a heterologous reference genome sequence

A comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA-seq in plant species

(2012) Daniel C. Ilut et al.   AMERICAN JOURNAL OF BOTANY

Pea Germplasm with Partial Resistance to Extends the Time Required by the Pathogen to Infect Host Tissue

(2012) Lyndon D. Porter   CROP SCIENCE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The Genetics of Hybrid Incompatibilities

(2011) Shamoni Maheshwari et al.   Annual Review of Genetics

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems

(2011) André E Minoche et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Calling SNPs without a reference sequence

(2010) Aakrosh Ratan et al.   BMC BIOINFORMATICS

SNP discovery by high-throughput sequencing in soybean

(2010) Xiaolei Wu et al.   BMC GENOMICS

SoyTEdb: a comprehensive database of transposable elements in the soybean genome

(2010) Jianchang Du et al.   BMC GENOMICS

High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence

(2010) David L Hyten et al.   BMC GENOMICS

Recent and Frequent Insertions of Chloroplast DNA into Maize Nuclear Chromosomes

(2010) L.M. Roark et al.   CYTOGENETIC AND GENOME RESEARCH

Identification of resistant sources against Sclerotinia sclerotiorum in Brassica species with emphasis on B. oleracea

(2010) J. Mei et al.   EUPHYTICA

High level of resistance to Sclerotinia sclerotiorum in introgression lines derived from hybridization between wild crucifers and the crop Brassica species B. napus and B. juncea

(2010) Harsh Garg et al.   FIELD CROPS RESEARCH

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison

(2010) Jianchang Du et al.   PLANT JOURNAL

Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome

(2010) M. Y. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polyploidy and angiosperm diversification

(2009) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

Identification of QTL underlying soluble pigment content in soybean stems related to resistance to soybean white mold (Sclerotinia sclerotiorum)

(2009) Dongmei Li et al.   EUPHYTICA

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Isolation and characterization of thirteen polymorphic microsatellite loci in the A-genome perennial group of the legume genusGlycine

(2009) MICHAEL J. BRONSKI et al.   Molecular Ecology Resources

Molecular and Chromosomal Evidence for Allopolyploidy in Soybean

(2009) N. Gill et al.   PLANT PHYSIOLOGY

Three Sequenced Legume Genomes and Many Crop Species: Rich Opportunities for Translational Genomics

(2009) S. B. Cannon et al.   PLANT PHYSIOLOGY

Instability of Plastid DNA in the Nuclear Genome

(2009) Anna E. Sheppard et al.   PLoS Genetics

DNA Transfer from Organelles to the Nucleus: The Idiosyncratic Genetics of Endosymbiosis

(2008) Tatjana Kleine et al.   Annual Review of Plant Biology

Broadening the Genetic Base of Soybean: A Multidisciplinary Approach

(2008) Gyuhwa Chung et al.   CRITICAL REVIEWS IN PLANT SCIENCES

High-efficiency transformation by biolistics of soybean, common bean and cotton transgenic plants

(2008) Elibio L Rech et al.   Nature Protocols

Resistance of peas toSclerotinia sclerotiorumin thePisumcore collection

(2008) L. D. Porter et al.   PLANT PATHOLOGY

Differential Accumulation of Retroelements and Diversification of NB-LRR Disease Resistance Genes in Duplicated Regions following Polyploidy in the Ancestor of Soybean

(2008) R. W. Innes et al.   PLANT PHYSIOLOGY

Replication of Nonautonomous Retroelements in Soybean Appears to Be Both Recent and Common

(2008) A. Wawrzynski et al.   PLANT PHYSIOLOGY