Overview of LASSO-related penalized regression methods for quantitative trait mapping and genomic selection

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent

(2015) Noah Simon et al.   Journal of Statistical Software

Efficient Computation of Ridge-Regression Best Linear Unbiased Prediction in Genomic Selection in Plant Breeding

(2012) H. P. Piepho et al.   CROP SCIENCE

Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers

(2012) Juan Burgueño et al.   CROP SCIENCE

Stability selection for genome-wide association

(2011) David H. Alexander et al.   GENETIC EPIDEMIOLOGY

Estimation of Quantitative Trait Locus Effects with Epistasis by Variational Bayes Algorithms

(2011) Zitong Li et al.   GENETICS

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Joint Identification of Multiple Genetic Variants via Elastic-Net Variable Selection in a Genome-Wide Association Analysis

(2010) Seoae Cho et al.   ANNALS OF HUMAN GENETICS

The Bayesian lasso for genome-wide association studies

(2010) Jiahan Li et al.   BIOINFORMATICS

Genomic selection and complex trait prediction using a fast EM algorithm applied to genome-wide markers

(2010) Ross K Shepherd et al.   BMC BIOINFORMATICS

SNP Selection in genome-wide and candidate gene studies via penalized logistic regression

(2010) Kristin L. Ayers et al.   GENETIC EPIDEMIOLOGY

Extended Bayesian LASSO for Multiple Quantitative Trait Loci Mapping and Unobserved Phenotype Prediction

(2010) C. M. Mutshinda et al.   GENETICS

Genomewide Multiple-Loci Mapping in Experimental Crosses by Iterative Adaptive Penalized Regression

(2010) W. Sun et al.   GENETICS

The Impact of Genetic Architecture on Genome-Wide Evaluation Methods

(2010) H. D. Daetwyler et al.   GENETICS

Prediction of Genetic Values of Quantitative Traits in Plant Breeding Using Pedigree and Molecular Markers

(2010) J. Crossa et al.   GENETICS

LASSO with cross-validation for genomic selection

(2010) M. GRAZIANO USAI et al.   Genetics Research

Improved Lasso for genomic selection

(2010) ANDRÉS LEGARRA et al.   Genetics Research

Overview of techniques to account for confounding due to population stratification and cryptic relatedness in genomic data association analyses

(2010) M J Sillanpää   HEREDITY

Identifying QTLs and Epistasis in Structured Plant Populations Using Adaptive Mixed LASSO

(2010) Dong Wang et al.   JOURNAL OF AGRICULTURAL BIOLOGICAL AND ENVIRONMENTAL STATISTICS

p-Values for High-Dimensional Regression

(2010) Nicolai Meinshausen et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Stability selection

(2010) Nicolai Meinshausen et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

A two-phase procedure for QTL mapping with regression models

(2010) Zehua Chen et al.   THEORETICAL AND APPLIED GENETICS

Genomic-Enabled Prediction Based on Molecular Markers and Pedigree Using the Bayesian Linear Regression Package in R

(2010) Paulino Pérez et al.   Plant Genome

High-dimensional variable selection

(2009) Larry Wasserman et al.   ANNALS OF STATISTICS

On the adaptive elastic-net with a diverging number of parameters

(2009) Hui Zou et al.   ANNALS OF STATISTICS

Genome-wide association analysis by lasso penalized logistic regression

(2009) Tong Tong Wu et al.   BIOINFORMATICS

Predicting Quantitative Traits With Regression Models for Dense Molecular Markers and Pedigree

(2009) G. de los Campos et al.   GENETICS

Discussion: One-step sparse estimates in nonconcave penalized likelihood models

(2008) Peter Bühlmann et al.   ANNALS OF STATISTICS

Extended Bayesian information criteria for model selection with large model spaces

(2008) J. Chen et al.   BIOMETRIKA

Bayesian LASSO for Quantitative Trait Loci Mapping

(2008) Nengjun Yi et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

The Bayesian Lasso

(2008) Trevor Park et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION