Extracting transmission networks from phylogeographic data for epidemic and endemic diseases: Ebola virus in Sierra Leone, 2009 H1N1 pandemic influenza and polio in Nigeria

Predictive spatial risk model of poliovirus to aid prioritization and hasten eradication in Nigeria

(2014) Alexander M Upfill-Brown et al.   BMC Medicine

Emergence of Zaire Ebola Virus Disease in Guinea

(2014) Sylvain Baize et al.   NEW ENGLAND JOURNAL OF MEDICINE

Ebola Virus Disease in West Africa — The First 9 Months of the Epidemic and Forward Projections

(2014)   NEW ENGLAND JOURNAL OF MEDICINE

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

(2014) S. K. Gire et al.   SCIENCE

Relating Phylogenetic Trees to Transmission Trees of Infectious Disease Outbreaks

(2013) Rolf J. F. Ypma et al.   GENETICS

Multiple Independent Emergences of Type 2 Vaccine-Derived Polioviruses during a Large Outbreak in Northern Nigeria

(2013) C. C. Burns et al.   JOURNAL OF VIROLOGY

The final stages of the global eradication of poliomyelitis

(2013) N. C. Grassly   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Contrasting the epidemiological and evolutionary dynamics of influenza spatial transmission

(2013) C. Viboud et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Viral Phylodynamics

(2013) Erik M. Volz et al.   PLoS Computational Biology

Inferring pandemic growth rates from sequence data

(2012) E. de Silva et al.   Journal of the Royal Society Interface

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Bayesian Inference Framework to Reconstruct Transmission Trees Using Epidemiological and Genetic Data

(2012) Marco J. Morelli et al.   PLoS Computational Biology

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

(2011) Daniel L. Ayres et al.   SYSTEMATIC BIOLOGY

Toward a quantitative understanding of viral phylogeography

(2011) Nuno Rodrigues Faria et al.   Current Opinion in Virology

From Emergence to Eradication: The Epidemiology of Poliomyelitis Deconstructed

(2010) N. Nathanson et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

DensiTree: making sense of sets of phylogenetic trees

(2010) R. R. Bouckaert   BIOINFORMATICS

Reconstructing disease outbreaks from genetic data: a graph approach

(2010) T Jombart et al.   HEREDITY

Three roads diverged? Routes to phylogeographic inference

(2010) Erik W. Bloomquist et al.   TRENDS IN ECOLOGY & EVOLUTION

Pandemic Potential of a Strain of Influenza A (H1N1): Early Findings

(2009) C. Fraser et al.   SCIENCE

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Evolutionary History and Phylogeography of Human Viruses

(2008) Edward C. Holmes   Annual Review of Microbiology

Methodologic Issues and Approaches to Spatial Epidemiology

(2008) Linda Beale et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus

(2008) E. M Cottam et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Infecting epidemiology with genetics: a new frontier in disease ecology

(2008) Elizabeth A. Archie et al.   TRENDS IN ECOLOGY & EVOLUTION