Bayesian Tests of Topology Hypotheses with an Example from Diving Beetles

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multiple Continental Radiations and Correlates of Diversification in Lupinus (Leguminosae): Testing for Key Innovation with Incomplete Taxon Sampling

(2012) Christopher S. Drummond et al.   SYSTEMATIC BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Phylogeny and classification of whirligig beetles (Coleoptera: Gyrinidae): relaxed-clock model outperforms parsimony and time-free Bayesian analyses

(2012) KELLY B. MILLER et al.   SYSTEMATIC ENTOMOLOGY

Macroevolutionary patterns in the diversification of parrots: effects of climate change, geological events and key innovations

(2011) Manuel Schweizer et al.   JOURNAL OF BIOGEOGRAPHY

A multi-locus analysis of phylogenetic relationships within cheilostome bryozoans supports multiple origins of ascophoran frontal shields

(2011) Sarah Knight et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Choosing among Partition Models in Bayesian Phylogenetics

(2010) Y. Fan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeographic analysis and environmental niche modeling of the plain-bellied watersnake (Nerodia erythrogaster) reveals low levels of genetic and ecological differentiation

(2010) Robert Makowsky et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Species discrimination and phylogenetic inference of 17 Chinese Leishmania isolates based on internal transcribed spacer 1 (ITS1) sequences

(2010) Bin-Bin Yang et al.   PARASITOLOGY RESEARCH

Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes

(2010) S. Kelly et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection

(2010) Wangang Xie et al.   SYSTEMATIC BIOLOGY

The evolutionary origin of a second radiation of annual Castilleja (Orobanchaceae) species in South America: The role of long distance dispersal and allopolyploidy

(2009) David C. Tank et al.   AMERICAN JOURNAL OF BOTANY

Bayesian Phylogenetics and Its Influence on Insect Systematics

(2009) Fredrik Ronquist et al.   Annual Review of Entomology

Introgression as a likely cause of mtDNA paraphyly in two allopatric skippers (Lepidoptera: Hesperiidae)

(2009) E V Zakharov et al.   HEREDITY

Fast radiation of the subfamily Lacertinae (Reptilia: Lacertidae): History or methodical artefact?

(2009) Mihaela Pavlicev et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny and classification of the tribe Hydaticini (Coleoptera: Dytiscidae): partition choice for Bayesian analysis with multiple nuclear and mitochondrial protein-coding genes

(2009) Kelly B. Miller et al.   ZOOLOGICA SCRIPTA

A new perspective on phylogeny and evolution of tetraodontiform fishes (Pisces: Acanthopterygii) based on whole mitochondrial genome sequences: Basal ecological diversification?

(2008) Yusuke Yamanoue et al.   BMC EVOLUTIONARY BIOLOGY

Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences

(2008) Yoichiro Azuma et al.   BMC EVOLUTIONARY BIOLOGY

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Phylogeny and diversification of diving beetles (Coleoptera: Dytiscidae)

(2008) Ignacio Ribera et al.   CLADISTICS

Newly discovered sister lineage sheds light on early ant evolution

(2008) C. Rabeling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Topology-Bayes versus Clade-Bayes in Phylogenetic Analysis

(2007) W. C. Wheeler et al.   MOLECULAR BIOLOGY AND EVOLUTION