When Outgroups Fail; Phylogenomics of Rooting the Emerging Pathogen, Coxiella burnetii

Evolution of a Pathogen: A Comparative Genomics Analysis Identifies a Genetic Pathway to Pathogenesis in Acinetobacter

(2013) Jason W. Sahl et al.   PLoS One

Antivirulence Genes: Insights into Pathogen Evolution through Gene Loss

(2012) Kimberly A. Bliven et al.   INFECTION AND IMMUNITY

Single-Nucleotide-Polymorphism Genotyping ofCoxiella burnetiiduring a Q Fever Outbreak in The Netherlands

(2011) Cornelis J. J. Huijsmans et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genetics ofCoxiella burnetii: on the path of specialization

(2011) Michael F Minnick et al.   Future Microbiology

Reconciling Gene and Genome Duplication Events: Using Multiple Nuclear Gene Families to Infer the Phylogeny of the Aquatic Plant Family Pontederiaceae

(2011) Rob W. Ness et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rooting phylogenies using gene duplications: An empirical example from the bees (Apoidea)

(2011) Seán G. Brady et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Rapid Typing of Coxiella burnetii

(2011) Heidie M. Hornstra et al.   PLoS One

Genomotyping of Coxiella burnetii Using Microarrays Reveals a Conserved Genomotype for Hard Tick Isolates

(2011) Quentin Leroy et al.   PLoS One

Rerooting the evolutionary tree of malaria parasites

(2011) Diana C. Outlaw et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population Genetics of Vibrio cholerae from Nepal in 2010: Evidence on the Origin of the Haitian Outbreak

(2011) R. S. Hendriksen et al.   mBio

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Continuing Evolution of Burkholderia mallei Through Genome Reduction and Large-Scale Rearrangements

(2010) Liliana Losada et al.   Genome Biology and Evolution

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

(2010) Giovanna Morelli et al.   NATURE GENETICS

Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer

(2009) Talima Pearson et al.   BMC BIOLOGY

Coxiella burnetii Isolates Cause Genogroup-Specific Virulence in Mouse and Guinea Pig Models of Acute Q Fever

(2009) K. E. Russell-Lodrigue et al.   INFECTION AND IMMUNITY

Phylogenetic understanding of clonal populations in an era of whole genome sequencing

(2009) Talima Pearson et al.   INFECTION GENETICS AND EVOLUTION

The Coxiella burnetii Ankyrin Repeat Domain-Containing Protein Family Is Heterogeneous, with C-Terminal Truncations That Influence Dot/Icm-Mediated Secretion

(2009) D. E. Voth et al.   JOURNAL OF BACTERIOLOGY

Pre-Columbian Origins for North American Anthrax

(2009) Leo J. Kenefic et al.   PLoS One

Candidate Antigens for Q Fever Serodiagnosis Revealed by Immunoscreening of a Coxiella burnetii Protein Microarray

(2008) P. A. Beare et al.   Clinical and Vaccine Immunology

Comparative Genomics Reveal Extensive Transposon-Mediated Genomic Plasticity and Diversity among Potential Effector Proteins within the Genus Coxiella

(2008) P. A. Beare et al.   INFECTION AND IMMUNITY

Potential use of host-derived genome signatures to root virus phylogenies

(2008) M SIMMONS   MOLECULAR PHYLOGENETICS AND EVOLUTION

Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation

(2008) J. Z. Li et al.   SCIENCE