Low-Parameter Phylogenetic Inference Under the General Markov Model

Is the General Time-Reversible Model Bad for Molecular Phylogenetics?

(2012) Jeremy G. Sumner et al.   SYSTEMATIC BIOLOGY

Lie Markov models

(2011) J.G. Sumner et al.   JOURNAL OF THEORETICAL BIOLOGY

Quartet MaxCut: A fast algorithm for amalgamating quartet trees

(2011) Sagi Snir et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Parameters of the Barry and Hartigan General Markov Model Are Statistically NonIdentifiable

(2011) Liwen Zou et al.   SYSTEMATIC BIOLOGY

Markov invariants and the isotropy subgroup of a quartet tree

(2009) J.G. Sumner et al.   JOURNAL OF THEORETICAL BIOLOGY

Comparison of methods for estimating the nucleotide substitution matrix

(2008) Maribeth Oscamou et al.   BMC BIOINFORMATICS

Using supernetworks to distinguish hybridization from lineage-sorting

(2008) Barbara R Holland et al.   BMC EVOLUTIONARY BIOLOGY

Saturation and base composition bias explain phylogenomic conflict in Plasmodium

(2008) Liliana M. Dávalos et al.   GENOMICS

Markov invariants, plethysms, and phylogenetics

(2008) J.G. Sumner et al.   JOURNAL OF THEORETICAL BIOLOGY

Spatial and Temporal Heterogeneity in Nucleotide Sequence Evolution

(2008) S. Whelan   MOLECULAR BIOLOGY AND EVOLUTION

Identifying evolutionary trees and substitution parameters for the general Markov model with invariable sites

(2007) Elizabeth S. Allman et al.   MATHEMATICAL BIOSCIENCES