The Devil in the Details: Interactions between the Branch-Length Prior and Likelihood Model Affect Node Support and Branch Lengths in the Phylogeny of the Psoraceae
Published 2011 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
The Devil in the Details: Interactions between the Branch-Length Prior and Likelihood Model Affect Node Support and Branch Lengths in the Phylogeny of the Psoraceae
Authors
Keywords
-
Journal
SYSTEMATIC BIOLOGY
Volume 60, Issue 4, Pages 541-561
Publisher
Oxford University Press (OUP)
Online
2011-03-25
DOI
10.1093/sysbio/syr022
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Branch length estimation and divergence dating: estimates of error in Bayesian and maximum likelihood frameworks
- (2010) Rachel S Schwartz et al. BMC EVOLUTIONARY BIOLOGY
- The conflation of ignorance and knowledge in the inference of clade posteriors
- (2010) Christopher P. Randle et al. CLADISTICS
- Statistical measures of uncertainty for branches in phylogenetic trees inferred from molecular sequences by using model-based methods
- (2010) Borys Wróbel JOURNAL OF APPLIED GENETICS
- Assessment of Substitution Model Adequacy Using Frequentist and Bayesian Methods
- (2010) Jennifer Ripplinger et al. MOLECULAR BIOLOGY AND EVOLUTION
- PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
- (2009) Nicolas Lartillot et al. BIOINFORMATICS
- Effects of data incompleteness on the relative performance of parsimony and Bayesian approaches in a supermatrix phylogenetic reconstruction of Mustelidae and Procyonidae (Carnivora)
- (2009) Mieczyslaw Wolsan et al. CLADISTICS
- Phylogenies reveal new interpretation of speciation and the Red Queen
- (2009) Chris Venditti et al. NATURE
- Long-Branch Attraction Bias and Inconsistency in Bayesian Phylogenetics
- (2009) Bryan Kolaczkowski et al. PLoS One
- When Trees Grow Too Long: Investigating the Causes of Highly Inaccurate Bayesian Branch-Length Estimates
- (2009) Jeremy M. Brown et al. SYSTEMATIC BIOLOGY
- Homoplasy and Clade Support
- (2009) Matthew C. Brandley et al. SYSTEMATIC BIOLOGY
- The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference
- (2009) Alan R. Lemmon et al. SYSTEMATIC BIOLOGY
- Cryptic Failure of Partitioned Bayesian Phylogenetic Analyses: Lost in the Land of Long Trees
- (2009) David C. Marshall SYSTEMATIC BIOLOGY
- Why Would Phylogeneticists Ignore Computerized Sequence Alignment?
- (2009) David A. Morrison SYSTEMATIC BIOLOGY
- PuMA: Bayesian analysis of partitioned (and unpartitioned) model adequacy
- (2008) J. M. Brown et al. BIOINFORMATICS
- Phyutility: a phyloinformatics tool for trees, alignments and molecular data
- (2008) S. A. Smith et al. BIOINFORMATICS
- A Mixed Branch Length Model of Heterotachy Improves Phylogenetic Accuracy
- (2008) Bryan Kolaczkowski et al. MOLECULAR BIOLOGY AND EVOLUTION
- A Site- and Time-Heterogeneous Model of Amino Acid Replacement
- (2008) Samuel Blanquart et al. MOLECULAR BIOLOGY AND EVOLUTION
- Broad phylogenomic sampling improves resolution of the animal tree of life
- (2008) Casey W. Dunn et al. NATURE
- Empirical evaluation of a prior for Bayesian phylogenetic inference
- (2008) Z. Yang PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo
- (2008) M. Pagel et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Phylogenetic models and model selection for noncoding DNA
- (2008) Scot A. Kelchner PLANT SYSTEMATICS AND EVOLUTION
- A framework for phylogenetic sequence alignment
- (2008) David A. Morrison PLANT SYSTEMATICS AND EVOLUTION
- On the Distributions of Bootstrap Support and Posterior Distributions for a Star Tree
- (2008) Edward Susko SYSTEMATIC BIOLOGY
- The Limitations of Ancestral State Reconstruction and the Evolution of the Ascus in the Lecanorales (Lichenized Ascomycota)
- (2008) Stefan Ekman et al. SYSTEMATIC BIOLOGY
- A Rapid Bootstrap Algorithm for the RAxML Web Servers
- (2008) Alexandros Stamatakis et al. SYSTEMATIC BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More