Sources of Error Inherent in Species-Tree Estimation: Impact of Mutational and Coalescent Effects on Accuracy and Implications for Choosing among Different Methods
Published 2010 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Sources of Error Inherent in Species-Tree Estimation: Impact of Mutational and Coalescent Effects on Accuracy and Implications for Choosing among Different Methods
Authors
Keywords
-
Journal
SYSTEMATIC BIOLOGY
Volume 59, Issue 5, Pages 573-583
Publisher
Oxford University Press (OUP)
Online
2010-09-11
DOI
10.1093/sysbio/syq047
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Statistical Phylogeography
- (2009) L. Lacey Knowles Annual Review of Ecology Evolution and Systematics
- STEM: species tree estimation using maximum likelihood for gene trees under coalescence
- (2009) Laura S. Kubatko et al. BIOINFORMATICS
- Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis
- (2009) Daniel A Hahn et al. BMC GENOMICS
- Incomplete Lineage Sorting: Consistent Phylogeny Estimation from Multiple Loci
- (2009) E. Mossel et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Maximum tree: a consistent estimator of the species tree
- (2009) Liang Liu et al. JOURNAL OF MATHEMATICAL BIOLOGY
- Strong Evidence for Lineage and Sequence Specificity of Substitution Rates and Patterns in Drosophila
- (2009) N. D. Singh et al. MOLECULAR BIOLOGY AND EVOLUTION
- What Is the Danger of the Anomaly Zone for Empirical Phylogenetics?
- (2009) Huateng Huang et al. SYSTEMATIC BIOLOGY
- Species Trees from Highly Incongruent Gene Trees in Rice
- (2009) Karen A. Cranston et al. SYSTEMATIC BIOLOGY
- Estimating Species Trees: Methods of Phylogenetic Analysis When There Is Incongruence across Genes
- (2009) L. Lacey Knowles SYSTEMATIC BIOLOGY
- Maximum Likelihood Estimates of Species Trees: How Accuracy of Phylogenetic Inference Depends upon the Divergence History and Sampling Design
- (2009) John E. McCormack et al. SYSTEMATIC BIOLOGY
- Estimating Species Phylogenies Using Coalescence Times among Sequences
- (2009) Liang Liu et al. SYSTEMATIC BIOLOGY
- Gene tree discordance, phylogenetic inference and the multispecies coalescent
- (2009) James H. Degnan et al. TRENDS IN ECOLOGY & EVOLUTION
- Species Tree Inference by Minimizing Deep Coalescences
- (2009) Cuong Than et al. PLoS Computational Biology
- Resolving Species Phylogenies of Recent Evolutionary Radiations1
- (2008) L. Lacey Knowles et al. ANNALS OF THE MISSOURI BOTANICAL GARDEN
- BEST: Bayesian estimation of species trees under the coalescent model
- (2008) L. Liu BIOINFORMATICS
- ESTIMATING SPECIES TREES USING MULTIPLE-ALLELE DNA SEQUENCE DATA
- (2008) Liang Liu et al. EVOLUTION
- IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
- (2008) Scott V. Edwards EVOLUTION
- Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow
- (2008) A ECKERT et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Dating of divergences within the Rattus genus phylogeny using whole mitochondrial genomes
- (2008) Judith H. Robins et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Comparison of Species Tree Methods for Reconstructing the Phylogeny of Bearded Manakins (Aves: Pipridae, Manacus) from Multilocus Sequence Data
- (2008) Robb T. Brumfield et al. SYSTEMATIC BIOLOGY
- Does Choice in Model Selection Affect Maximum Likelihood Analysis?
- (2008) Jennifer Ripplinger et al. SYSTEMATIC BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started