Targeted genome enrichment for efficient purification of endosymbiont DNA from host DNA

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Still a Host of Hosts for Wolbachia: Analysis of Recent Data Suggests That 40% of Terrestrial Arthropod Species Are Infected

(2012) Roman Zug et al.   PLoS One

Simultaneous genome sequencing of symbionts and their hosts

(2012) Sujai Kumar et al.   SYMBIOSIS

Widespread Wolbachia infection in terrestrial isopods and other crustaceans

(2012) Richard Cordaux et al.   ZooKeys

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

Complete Bacteriophage Transfer in a Bacterial Endosymbiont (Wolbachia) Determined by Targeted Genome Capture

(2011) Bethany N. Kent et al.   Genome Biology and Evolution

The impact of endosymbionts on the evolution of host sex-determination mechanisms

(2011) Richard Cordaux et al.   TRENDS IN GENETICS

Hybrid selection for sequencing pathogen genomes from clinical samples

(2011) Alexandre Melnikov et al.   GENOME BIOLOGY

A simple protocol to obtain highly pure Wolbachia endosymbiont DNA for genome sequencing

(2010) Iñaki Iturbe-Ormaetxe et al.   JOURNAL OF MICROBIOLOGICAL METHODS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

The Wolbachia endosymbiont as an anti-filarial nematode target

(2010) Barton E. Slatko et al.   SYMBIOSIS

r2cat: synteny plots and comparative assembly

(2009) P. Husemann et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Wolbachia: more than just a bug in insects genitals

(2009) Aggeliki Saridaki et al.   CURRENT OPINION IN MICROBIOLOGY

The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans

(2009) L. Klasson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Parasitism and Mutualism in Wolbachia: What the Phylogenomic Trees Can and Cannot Say

(2008) S. R. Bordenstein et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome Evolution of Wolbachia Strain wPip from the Culex pipiens Group

(2008) L. Klasson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Wolbachia: master manipulators of invertebrate biology

(2008) John H. Werren et al.   NATURE REVIEWS MICROBIOLOGY