Discordance between morphological and molecular species boundaries among Caribbean species of the reef spongeCallyspongia

Genetic species delineation among branching Caribbean Porites corals

(2014) C. Prada et al.   CORAL REEFS

The Analysis of Eight Transcriptomes from All Poriferan Classes Reveals Surprising Genetic Complexity in Sponges

(2014) Ana Riesgo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Species detection and individual assignment in species delimitation: can integrative data increase efficacy?

(2014) D. L. Edwards et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genome-wide evidence for speciation with gene flow inHeliconiusbutterflies

(2013) Simon H. Martin et al.   GENOME RESEARCH

Could some coral reefs become sponge reefs as our climate changes?

(2013) James J. Bell et al.   GLOBAL CHANGE BIOLOGY

Nearly Complete 28S rRNA Gene Sequences Confirm New Hypotheses of Sponge Evolution

(2013) Robert W. Thacker et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Phylogeny and Systematics of Demospongiae in Light of New Small-Subunit Ribosomal DNA (18S) Sequences

(2013) N. E. Redmond et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Evaluating summary statistics used to test for incomplete lineage sorting: mito-nuclear discordance in the reef spongeCallyspongia vaginalis

(2013) Melissa B. DeBiasse et al.   MOLECULAR ECOLOGY

The genomic consequences of adaptive divergence and reproductive isolation between species of manakins

(2013) T. L. Parchman et al.   MOLECULAR ECOLOGY

Reconstruction of Family-Level Phylogenetic Relationships within Demospongiae (Porifera) Using Nuclear Encoded Housekeeping Genes

(2013) Malcolm S. Hill et al.   PLoS One

Surviving in a Marine Desert: The Sponge Loop Retains Resources Within Coral Reefs

(2013) Jasper M. de Goeij et al.   SCIENCE

Multilocus Species Delimitation in a Complex of Morphologically Conserved Trapdoor Spiders (Mygalomorphae, Antrodiaetidae, Aliatypus)

(2013) Jordan D. Satler et al.   SYSTEMATIC BIOLOGY

Genomic islands of divergence are not affected by geography of speciation in sunflowers

(2013) S. Renaut et al.   Nature Communications

Experimental silicon demand by the sponge Hymeniacidon perlevis reveals chronic limitation in field populations

(2012) Manuel Maldonado et al.   HYDROBIOLOGIA

Phylogenetic relationships among the Caribbean members of the Cliona viridis complex (Porifera, Demospongiae, Hadromerida) using nuclear and mitochondrial DNA sequences

(2012) Dairo Escobar et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

The genomics of speciation-with-gene-flow

(2012) Jeffrey L. Feder et al.   TRENDS IN GENETICS

Cryptic speciation and phylogeographic relationships in the elephant ear spongeIanthella basta(Porifera, Ianthellidae) from northern Australia

(2012) NIKOS ANDREAKIS et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Polymorphism in a common Atlantic reef coral (Montastraea cavernosa) and its long-term evolutionary implications

(2011) Ann F. Budd et al.   EVOLUTIONARY ECOLOGY

Phenotypic variability in the Caribbean Orange Icing sponge Mycale laevis (Demospongiae: Poecilosclerida)

(2011) Tse-Lynn Loh et al.   HYDROBIOLOGIA

Comparison of reproductive patterns among 7 Caribbean sponge species does not reveal a resource trade-off with chemical defenses

(2011) Wai Leong et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic diversity of the imperilled bath sponge Spongia officinalis Linnaeus, 1759 across the Mediterranean Sea: patterns of population differentiation and implications for taxonomy and conservation

(2011) T. DAILIANIS et al.   MOLECULAR ECOLOGY

Morphology and molecules on opposite sides of the diversity gradient: Four cryptic species of the Cliona celata (Porifera, Demospongiae) complex in South America revealed by mitochondrial and nuclear markers

(2011) Thiago Silva de Paula et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic Relationships of the Marine Haplosclerida (Phylum Porifera) Employing Ribosomal (28S rRNA) and Mitochondrial (cox1, nad1) Gene Sequence Data

(2011) Niamh E. Redmond et al.   PLoS One

Phylogenetic and Coalescent Strategies of Species Delimitation in Snubnose Darters (Percidae: Etheostoma)

(2011) Richard C. Harrington et al.   SYSTEMATIC BIOLOGY

Species delimitation of common reef corals in the genus Pocillopora using nucleotide sequence phylogenies, population genetics and symbiosis ecology

(2010) JORGE H. PINZÓN et al.   MOLECULAR ECOLOGY

Species boundaries and phylogenetic relationships between Atlanto-Mediterranean shallow-water and deep-sea coral associated Hexadella species (Porifera, Ianthellidae)

(2010) Julie Reveillaud et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular evidence of cryptic speciation in the “cosmopolitan” excavating sponge Cliona celata (Porifera, Clionaidae)

(2010) J.R. Xavier et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fragments or propagules? Reproductive tradeoffs among Callyspongia spp. from Florida coral reefs

(2010) Wai Leong et al.   OIKOS

CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida)

(2010) Judith Pöppe et al.   PLoS One

Ecomorph or Endangered Coral? DNA and Microstructure Reveal Hawaiian Species Complexes: Montipora dilatata/flabellata/turgescens & M. patula/verrilli

(2010) Zac H. Forsman et al.   PLoS One

Bayesian species delimitation using multilocus sequence data

(2010) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus)

(2010) A. D. Leache et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phenotypic plasticity in the Caribbean sponge Callyspongia vaginalis (Porifera: Haplosclerida)

(2010) Susanna López-Legentil et al.   SCIENTIA MARINA

Genetic assessment of connectivity in the common reef sponge, Callyspongia vaginalis (Demospongiae: Haplosclerida) reveals high population structure along the Florida reef tract

(2009) M. B. DeBiasse et al.   CORAL REEFS

Bitten down to size: Fish predation determines growth form of the Caribbean coral reef sponge Mycale laevis

(2009) Tse-Lynn Loh et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Phylogenetic-Signal Dissection of Nuclear Housekeeping Genes Supports the Paraphyly of Sponges and the Monophyly of Eumetazoa

(2009) E. A. Sperling et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nuclear sequences reveal mid-range isolation of an imperilled deep-water coral population

(2009) RON I. EYTAN et al.   MOLECULAR ECOLOGY

Gene tree discordance, phylogenetic inference and the multispecies coalescent

(2009) James H. Degnan et al.   TRENDS IN ECOLOGY & EVOLUTION

Genetic structure of the Caribbean giant barrel sponge Xestospongia muta using the I3-M11 partition of COI

(2008) S. López-Legentil et al.   CORAL REEFS

The mitochondrial genome of Hydra oligactis (Cnidaria, Hydrozoa) sheds new light on animal mtDNA evolution and cnidarian phylogeny

(2008) Ehsan Kayal et al.   GENE

Slow Mitochondrial COI Sequence Evolution at the Base of the Metazoan Tree and Its Implications for DNA Barcoding

(2008) Danwei Huang et al.   JOURNAL OF MOLECULAR EVOLUTION

Large expansion segments in 18S rDNA support a new sponge clade (Class Demospongiae, Order Haplosclerida)

(2008) Niamh E. Redmond et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Reconstructing ordinal relationships in the Demospongiae using mitochondrial genomic data

(2008) Dennis V. Lavrov et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION