4.3 Article

Ab initio study of Pd-decorated single-walled carbon nanotube with C-vacancy as CO sensor

Journal

STRUCTURAL CHEMISTRY
Volume 25, Issue 1, Pages 9-19

Publisher

SPRINGER/PLENUM PUBLISHERS
DOI: 10.1007/s11224-013-0220-6

Keywords

Single-walled carbon nanotube (SWCNT); C-vacancy; Palladium; CO sensor; AIM; NBO

Ask authors/readers for more resources

In this paper, the adsorption of CO onto Pd-decorated (5,5) single-walled carbon nanotube (Pd/SWCNT) and Pd-doped (5,5) single-walled carbon nanotube (Pd/SWCNT-V) has been investigated using ab initio studies. The larger binding energies and charges transfer show that the adsorption of CO onto Pd/SWCNT is more stable than that of CO onto Pd/SWCNT-V. The Pd/SWCNT can be utilized as good sensors for CO molecules due to strong binding energy and large electron charge transfer between the Pd/SWCNT and this molecule. Furthermore, the topological properties of the electron density distributions for intramolecular interactions have been analyzed in terms of the Bader theory of atoms in molecules. Finally, the natural population analysis method has been used to evaluate the Pd-C and Pd/CO interactions.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.3
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Chemistry, Analytical

Simultaneous spectrophotometric determination of the residual of ciprofloxacin, famotidine, and tramadol using magnetic solid phase extraction coupled with multivariate calibration methods

Mohabat Taghizade, Mahmoud Ebrahimi, Ebrahim Fooladi, Mehdi Yoosefian

Summary: A method based on magnetic solid phase extraction was developed for simultaneous spectrophotometric determination of three drugs in plasma, hospital waste, and river water. The method showed good linearity, extraction efficiency, and recovery rates, making it a sensitive and cost-effective approach for multi-drug analysis.

MICROCHEMICAL JOURNAL (2021)

Article Chemistry, Physical

LSPR biosensing for the early-stage prostate cancer detection using hydrogen bonds between PSA and antibody: Molecular dynamic and experimental study

Mohamad Mahani, Fatemeh Alimohamadi, Masoud Torkzadeh-Mahani, Zahra Hassani, Faeze Khakbaz, Faten Divsar, Mehdi Yoosefian

Summary: In this study, an ultra-sensitive label-free nanobiosensor was developed for the detection of PSA at low concentrations in urine samples. Computational modeling and molecular dynamics simulations were used to investigate the binding mechanism between antibody and PSA protein, while factors affecting the detection were optimized to achieve a detection limit of 0.2 ng mL(-1) and calibration sensitivity of 0143.75 nm (ng mL(-1)).

JOURNAL OF MOLECULAR LIQUIDS (2021)

Article Materials Science, Multidisciplinary

Potential applications of armchair, zigzag, and chiral boron nitride nanotubes as a drug delivery system: Letrozole anticancer drug encapsulation

Hamed Sargazi-Avval, Mehdi Yoosefian, Mansour Ghaffari-Moghaddam, Mostafa Khajeh, Mousa Bohlooli

Summary: This study investigated the potential of different chiral boron nitride nanotubes as drug carriers for Letrozole delivery, showing reduced side effects and increased solubility. Quantum mechanical calculations confirmed the adsorption process of Letrozole in various nanotube structures, with chemisorption favored in armchair and chiral nanotubes, and physisorption predominant in the zigzag nanotube.

APPLIED PHYSICS A-MATERIALS SCIENCE & PROCESSING (2021)

Article Pharmacology & Pharmacy

Doxorubicin delivery to breast cancer cells with transferrin-targeted carbon quantum dots: An in vitro and in silico study

Mohamad Mahani, Maryam Pourrahmani-Sarbanani, Mehdi Yoosefian, Faten Divsar, Seyedeh Maral Mousavi, Alireza Nomani

Summary: This study developed a nano-carrier based on transferrin-modified carbon quantum dots for the targeted delivery of the anti-breast cancer drug doxorubicin. The nano-carrier showed efficient cytotoxicity and cellular uptake in MCF-7 cells, and the conjugate was found to be more toxic than doxorubicin alone due to its ability to overcome multidrug resistance of cancer cells. Molecular docking studies confirmed the potential of this system as an excellent targeted drug delivery system for breast cancer therapy.

JOURNAL OF DRUG DELIVERY SCIENCE AND TECHNOLOGY (2021)

Article Chemistry, Physical

Design and development of polymeric micelles as nanocarriers for anti-cancer Ribociclib drug

Zhongjie Fei, Mehdi Yoosefian

Summary: This study investigates the assembly mechanism of Ribociclib encapsulated by DPC micelle using all-atom molecular dynamics simulations. The main forces involved in the drug encapsulation process are hydrophobic and van der Waals interactions, with hydrogen bonding and electrostatic interactions also contributing. Solvent accessible surface area and radial distribution function analyses show that DPC micelles can improve the aqueous solubility of hydrophobic drugs, providing a new pathway for designing drug delivery systems with necessary properties.

JOURNAL OF MOLECULAR LIQUIDS (2021)

Article Chemistry, Physical

Water molecules can significantly increase the explosive sensitivity of Nitrotriazolone (NTO) in storage and transport

Rongbin Wei, Zhongjie Fei, Mehdi Yoosefian

Summary: Density functional theory studies were conducted to investigate the effect of molecular structures and mechanisms of proton transfer in nitrotriazolone complexes. The results showed a significant decrease in the proton transfer barrier height for dehydrated nitrotriazolone and keto-enol tautomer reactions compared to non-water-assisted processes.

JOURNAL OF MOLECULAR LIQUIDS (2021)

Article Biology

In silico evaluation of atazanavir as a potential HIV main protease inhibitor and its comparison with new designed analogs

Mehdi Yoosefian, Maryam Zeraati Moghani, Alfredo Juan

Summary: Researchers have discovered a new human immunodeficiency virus (HIV) protease inhibitor called ATV7 through molecular docking and molecular dynamics simulation, which has better antiviral effects and inhibitory ability than the existing drug atazanavir.

COMPUTERS IN BIOLOGY AND MEDICINE (2022)

Article Chemistry, Analytical

Preconcentration and determination of five antidepressants from human milk and urine samples by stir bar filled magnetic ionic liquids using liquid-liquid-liquid microextraction-high-performance liquid chromatography

Mohabat Taghizadeh, Mahmoud Ebrahimi, Ebrahim Fooladi, Mehdi Yoosefian

Summary: A sensitive and straightforward liquid-liquid-liquid microextraction method was developed using magnetic ionic liquids as the extraction phase to preconcentrate and cleanup antidepressants from biological samples. The method showed good calibration curves, proper detection limit, reasonable limit of quantification, wide linear ranges, high preconcentration factors, and suitable relative standard deviation.

JOURNAL OF SEPARATION SCIENCE (2022)

Article Chemistry, Multidisciplinary

Molecular Dynamics Simulations of Docetaxel Adsorption on Graphene Quantum Dots Surface Modified by PEG-b-PLA Copolymers

Mehdi Yoosefian, Mitra Fouladi, Leonard Ionut Atanase

Summary: This study investigated the efficiency and loading of a carbon-based nanocarrier for anticancer drug delivery. The selected material demonstrated good stability, and the presence of a surface modifier delayed the adsorption of the drug initially.

NANOMATERIALS (2022)

Article Chemistry, Multidisciplinary

Palladium-Doped Single-Walled Carbon Nanotubes as a New Adsorbent for Detecting and Trapping Volatile Organic Compounds: A First Principle Study

Mehdi Yoosefian, Elaheh Ayoubi, Leonard Ionut Atanase

Summary: This study explores the potential possibility of using palladium-doped single-walled carbon nanotubes (Pd/SWCNT-V) as a resource for detecting and adsorbing VOCs. The results demonstrate that Pd/SWCNT-V has efficient adsorption capability for VOCs such as acetonitrile, styrene, and perchloroethylene, making it a promising material for VOC removal from the environment.

NANOMATERIALS (2022)

Article Biochemistry & Molecular Biology

Development of venetoclax performance using its new derivatives on BCL-2 protein inhibition

Vahideh Najafi, Mehdi Yoosefian, Zahra Hassani

Summary: In this study, new analogs of venetoclax (VNT) were designed to improve the performance of an anticancer drug. Molecular docking and molecular dynamics simulations were performed, and the results showed that the newly designed ligand had better performance in inhibiting BCL-2 protein compared to VNT.

CELL BIOCHEMISTRY AND FUNCTION (2022)

Article Materials Science, Biomaterials

In vitro and in silico characteristics of doxorubicin-loaded four polymeric-based polysaccharides-modified super paramagnetic iron oxide nanoparticles for cancer chemotherapy and magnetic resonance imaging

Mahdiyeh Hasani, Saeed Ghanbarzadeh, Hossein Hajiabadi, Tohid Mortezazadeh, Mehdi Yoosefian, Hamid Akbari Javar

Summary: Super Paramagnetic Iron Oxide Nanoparticles (SPIONs) have gained significant attention in drug delivery systems due to their high surface-to-volume ratio and content. This study aimed to synthesize four different formulations of magnetic nanoparticles coated with various polymeric layers to find the most suitable polymer for higher drug loading efficiency and capacity. Molecular dynamics simulation and quantum mechanics were used to investigate the interaction mechanism between polysaccharide polymers and Doxorubicin (DOX). The results showed that Fe3O4-beta CD-DOX nanoparticles had a spherical shape and a size of around 15 nm. In vitro release investigation demonstrated sustained release performance for more than 72 hours in an acidic medium. Cytotoxicity assay revealed that Fe3O4-beta CD-DOX nanoparticles exhibited higher toxicity in cancer cells compared to normal cells. Overall, the prepared system showed promise as a drug delivery system for cancer treatment.

INTERNATIONAL JOURNAL OF POLYMERIC MATERIALS AND POLYMERIC BIOMATERIALS (2022)

Article Chemistry, Physical

Investigation of self-assembled poly(ethylene glycol)-poly(L-lactic acid) micelle as potential drug delivery system for poorly water soluble anticancer drug abemaciclib

Zahra Ansarinik, Hamzeh Kiyani, Mehdi Yoosefian

Summary: Polymer-based drug delivery systems have great potential for delivering poorly water-soluble anticancer drugs through self-assembled nanocarriers. This study investigated the assembly mechanism of abemaciclib drug encapsulated by PEG-PLA copolymer micelles using molecular dynamics simulations. The results showed that hydrophobic and hydrophilic interactions played a crucial role in the drug encapsulation process, and hydrogen bonding and electrostatic interactions also contributed to the aggregation of PEG-PLA copolymer chains.

JOURNAL OF MOLECULAR LIQUIDS (2022)

Article Chemistry, Multidisciplinary

Voltammetric approach for pharmaceutical samples analysis; simultaneous quantitative determination of resorcinol and hydroquinone

Ebrahim Nabatian, Mahdi Mousavi, Mostafa Pournamdari, Mehdi Yoosefian, Saeid Ahmadzadeh

Summary: A simple and precise analytical method has been developed for the determination of resorcinol and hydroquinone in pharmaceutical samples using carbon paste electrode modified with ionic liquid and nanoparticles. The method shows promising potential in pharmaceutical analysis.

BMC CHEMISTRY (2022)

Article Chemistry, Analytical

Chemical reduction as a facile colorimetric approach for selective TNT detection by spectrophotometry and photothermal lens spectroscopy

Naader Alizadeh, Javad Yoosefian

Summary: This study presents a simple method for determining TNT using NaBH4 as a reducing/colorimetric reagent. The method is able to differentiate TNT from other nitroaromatic compounds through time-dependent selectivity. UV-vis spectrophotometry and photothermal lens spectrometry were employed as detection techniques, with the latter providing higher sensitivity.

TALANTA (2023)

No Data Available