Covariance adjustment for batch effect in gene expression data

The practical effect of batch on genomic prediction

(2012) Hilary S. Parker et al.   Statistical Applications in Genetics and Molecular Biology

Using control genes to correct for unwanted variation in microarray data

(2011) J. A. Gagnon-Bartsch et al.   BIOSTATISTICS

Adaptive Thresholding for Sparse Covariance Matrix Estimation

(2011) Tony Cai et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Frozen robust multiarray analysis (fRMA)

(2010) M. N. McCall et al.   BIOSTATISTICS

Testing the equality of several covariance matrices with fewer observations than the dimension

(2010) Muni S. Srivastava et al.   JOURNAL OF MULTIVARIATE ANALYSIS

Tackling the widespread and critical impact of batch effects in high-throughput data

(2010) Jeffrey T. Leek et al.   NATURE REVIEWS GENETICS

A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data

(2010) J Luo et al.   PHARMACOGENOMICS JOURNAL

Covariance regularization by thresholding

(2009) Peter J. Bickel et al.   ANNALS OF STATISTICS

Ratio adjustment and calibration scheme for gene-wise normalization to enhance microarray inter-study prediction

(2009) Chunrong Cheng et al.   BIOINFORMATICS

Gene set internal coherence in the context of functional profiling

(2009) David Montaner et al.   BMC GENOMICS

High-Dimensional Sparse Factor Modeling: Applications in Gene Expression Genomics

(2009) Carlos M. Carvalho et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

(2009) Marcus J. Claesson et al.   PLoS One

Can Survival Prediction Be Improved By Merging Gene Expression Data Sets?

(2009) Haleh Yasrebi et al.   PLoS One

Merging two gene-expression studies via cross-platform normalization

(2008) Andrey A. Shabalin et al.   BIOINFORMATICS

High dimensional covariance matrix estimation using a factor model

(2008) Jianqing Fan et al.   JOURNAL OF ECONOMETRICS

Gene expression–based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study

(2008) Kerby Shedden et al.   NATURE MEDICINE