Review
Biochemistry & Molecular Biology
Peter G. Kennedy, Francois Maillard
Summary: Dead microbial cells, known as necromass, are important sources of carbon and nutrients in soils. Recent studies have focused on the microbial communities associated with decomposing fungal necromass in different terrestrial ecosystems. This article highlights the ecological patterns and research frontiers of the fungal necrobiome, and suggests that combining laboratory assays with field-based surveys and experiments will enhance our understanding of its composition and role in soil biogeochemical cycling.
TRENDS IN MICROBIOLOGY
(2023)
Article
Environmental Sciences
Patrick Baudy, Jochen P. Zubrod, Marco Konschak, Nina Roeder, Thu Huyen Nguyen, Verena C. Schreiner, Christiane Baschien, Ralf Schulz, Mirco Bundschuh
Summary: Aquatic hyphomycetes play important roles in stream ecosystems, but are at risk from fungicide exposure. Fungicide exposure may lead to shifts in fungal community composition, impacting leaf decomposition. Tolerant species in mixed cultures help safeguard the decomposition process.
ENVIRONMENTAL POLLUTION
(2021)
Article
Agriculture, Multidisciplinary
Alicia Morugan-Coronado, Paula Perez-Rodriguez, Eliana Insolia, Diego Soto-Gomez, David Fernandez-Calvino, Raul Zornoza
Summary: This study conducted a meta-analysis to evaluate the changes in microbial abundance in agricultural soils under different management practices and environmental factors. The results showed that organic fertilization and reduced tillage had overall positive effects on soil microbial abundance, while the lack of fertilization had a negative effect. These findings provide important insights for land-managers, policy-makers, and farmers in selecting sustainable cropping systems that enhance microbial abundance.
AGRICULTURE ECOSYSTEMS & ENVIRONMENT
(2022)
Article
Mycology
Danushka S. Tennakoon, Chang-Hsin Kuo, Witoon Purahong, Eleni Gentekaki, Chayakorn Pumas, Itthayakorn Promputtha, Kevin D. Hyde
Summary: This study investigates the effects of tree species and leaf litter chemistry on fungal community succession during leaf litter decomposition. The results show that closely related tree species have different fungal communities during decomposition, and a high number of fungal species are specific to a particular tree species. Fungal diversity increases at the beginning of leaf decay and declines at the final stages. This study contributes to our understanding of fungal diversity and provides a database for future studies.
Article
Biodiversity Conservation
Encarnacion Fenoy, Arunava Pradhan, Claudia Pascoal, Juan Rubio-Rios, Daniela Batista, Francisco J. Moyano-Lopez, Fernanda Cassio, J. Jesus Casas
Summary: Evidence suggests a strong connection between biodiversity and ecosystem functions in aquatic fungal communities, which can be influenced by environmental variables and leaf-litter traits. Functional redundancy among fungi may counteract the effects of biodiversity changes on ecosystem functioning. Temperature and nutrients impact taxonomic and functional diversity of aquatic fungi in leaf-litter decomposition processes.
GLOBAL CHANGE BIOLOGY
(2022)
Article
Biodiversity Conservation
Meiqi Yin, Lele Liu, Yiming Wu, Wenyi Sheng, Xiangyan Ma, Ning Du, Pengcheng Zhu, Cui Wang, Zhaojie Cui, Hans Brix, Franziska Eller, Weihua Guo
Summary: This study examines the effects of species and genetic diversity on litter decomposition in coastal wetlands. The results show that higher species and genetic diversity have negative effects on plant litter decomposition.
ECOLOGICAL INDICATORS
(2022)
Article
Engineering, Environmental
Feilong Li, Yan Zhang, Florian Altermatt, Xiaowei Zhang
Summary: The study demonstrates that combining environmental DNA (eDNA) metabarcoding and measurements of ecosystem functions with physicochemical elements can more accurately assess the ecological status of rivers and improve assessment accuracy and biodiversity. Using 40 indicators of biodiversity and ecosystem functions, the study shows effective prediction of human impacts on ecosystems.
ENVIRONMENTAL SCIENCE & TECHNOLOGY
(2021)
Article
Forestry
Jiaping Yang, Junpeng Mu, Yu Zhang, Changkun Fu, Qing Dong, Yulian Yang, Qinggui Wu
Summary: The study analyzed the variations in carbon quality of plant litter and found that fir, spruce, and willow had higher levels of recalcitrant carbon fractions compared to rosa. Rosa's litter showed lower levels of recalcitrant carbon fractions, suggesting a more stable and resistant structure.
Article
Soil Science
Yuqi Wei, Xue Xiong, Masahiro Ryo, Warwick B. Badgery, Yixian Bi, Gaowen Yang, Yingjun Zhang, Nan Liu
Summary: This study investigates the impact of litter input frequency and amount on soil organic carbon (SOC) formation and microbial community. The results show that repeated litter input enhances SOC formation, increases carbon use efficiency, and affects the ratio between fungi and bacteria.
BIOLOGY AND FERTILITY OF SOILS
(2022)
Article
Soil Science
Andras Kari, Zsuzsanna Nagymate, Csaba Romsics, Balazs Vajna, Erika Toth, Rita Lazanyi-Kovacs, Boglarka Rizo, Jozsef Kutasi, Botond Bernhardt, Eva Farkas, Karoly Marialigeti
Summary: This study investigates the use of biochar and acid stress-adapted PGPR inoculants to enhance soil fertility and improve maize growth in acidic sandy soil. The results showed that high doses of biochar treatment positively influenced the abundance of PGP bacteria, affecting soil bacterial communities and enhancing maize above-ground biomass. The study suggests that biochar can play a significant role in influencing soil nutrient cycles.
APPLIED SOIL ECOLOGY
(2021)
Article
Soil Science
Jun Li, Chenhui Chang, Wanqin Yang
Summary: The study revealed significant variations in the interactions between invertebrates and microbes in decomposing litter with seasonal rainfall and tree species. Invertebrate exclusion had differential effects on bacterial and fungal biomass, as well as mass loss rate of litter. This highlights the complex relationships between invertebrates and microbes in the litter decomposition process.
APPLIED SOIL ECOLOGY
(2022)
Article
Mycology
Xueguang Sun, Yang Zheng, Gang Xu, Qiqiang Guo, Jianhui Tan, Guijie Ding
Summary: Investigation revealed the diversity of fungal communities in different micro-environments of Pinus massoniana forests, where some phyllospheric fungi may play crucial roles in litter decomposition. A core microbiome of 60 OTUs was found in all sample types, potentially playing different ecological roles in different environments.
Article
Multidisciplinary Sciences
Marta A. Moitinho, Josiane B. Chiaramonte, Laura Bononi, Thiago Gumiere, Itamar S. Melo, Rodrigo G. Taketani
Summary: This study investigates the dynamics of fungal communities during the decomposition process of three common plant species in a mangrove habitat in Brazil. The results show that fungal communities display specific succession patterns in different plant species, which may be related to their ecological roles.
SCIENTIFIC REPORTS
(2022)
Article
Ecology
Tyler M. Rippel, Gina M. Wimp
Summary: This study analyzed the changes in fungal communities and their functionality during senescence and litter decomposition of the foundation plant species Spartina patens. The research found that different types of plant biomass hosted unique fungal communities and litter chemistry. Functional groups in live biomass were replaced by diverse saprotrophs during senescence, and lignocellulose saprotrophs showed the highest abundance in lower thatch.
Article
Geosciences, Multidisciplinary
Yulin Liu, Kaibo Wang, Lingbo Dong, Jiwei Li, Xiaozhen Wang, Zhouping Shangguan, Bodong Qu, Lei Deng
Summary: This study conducted a decomposition experiment across four successional stages to investigate the dynamics and mechanisms of litter decomposition and soil organic carbon (SOC) sequestration following vegetation succession. The results showed that litter decomposition rates decreased gradually with vegetation succession, and litter quality was the major factor controlling the decomposition rate. The early successional stage had higher rates of litter decomposition and SOC turnover, while the late successional stage showed lower rates. Litter inputs significantly increased SOC content in the early stage, but soil carbon sequestration reached saturation in the late stage.
Article
Soil Science
Miwa Arai, Toshiko Miura, Hiroshi Tsuzura, Yukio Minamiya, Nobuhiro Kaneko
Article
Agronomy
Rahmatullah Hashimi, Masakazu Komatsuzaki, Takuya Mineta, Satoshi Kaneda, Nobuhiro Kaneko
BIOLOGICAL AGRICULTURE & HORTICULTURE
(2019)
Article
Ecology
Toshiko Miura, Roland Sanchez, Luis E. Castaneda, Karina Godoy, Olga Barbosa
ECOLOGY AND EVOLUTION
(2019)
Article
Entomology
Tomonori Tsunoda, Fujio Hyodo, Daisuke Sugiura, Nobuhiro Kaneko, Satoshi N. Suzuki
ENTOMOLOGICAL SCIENCE
(2019)
Article
Multidisciplinary Sciences
Helen R. P. Phillips, Carlos A. Guerra, Marie L. C. Bartz, Maria J. I. Briones, George Brown, Thomas W. Crowther, Olga Ferlian, Konstantin B. Gongalsky, Johan van den Hoogen, Julia Krebs, Alberto Orgiazzi, Devin Routh, Benjamin Schwarz, Elizabeth M. Bach, Joanne Bennett, Ulrich Brose, Thibaud Decaens, Birgitta Koenig-Ries, Michel Loreau, Jerome Mathieu, Christian Mulder, Wim H. van der Putten, Kelly S. Ramirez, Matthias C. Rillig, David Russell, Michiel Rutgers, Madhav P. Thakur, Franciska T. de Vries, Diana H. Wall, David A. Wardle, Miwa Arai, Fredrick O. Ayuke, Geoff H. Baker, Robin Beausejour, Jose C. Bedano, Klaus Birkhofer, Eric Blanchart, Bernd Blossey, Thomas Bolger, Robert L. Bradley, Mac A. Callaham, Yvan Capowiez, Mark E. Caulfield, Amy Choi, Felicity V. Crotty, Andrea Davalos, Dario J. Diaz Cosin, Anahi Dominguez, Andres Esteban Duhour, Nick van Eekeren, Christoph Emmerling, Liliana B. Falco, Rosa Fernandez, Steven J. Fonte, Carlos Fragoso, Andre L. C. Franco, Martine Fugere, Abegail T. Fusilero, Shaieste Gholami, Michael J. Gundale, Monica Gutierrez Lopez, Davorka K. Hackenberger, Luis M. Hernandez, Takuo Hishi, Andrew R. Holdsworth, Martin Holmstrup, Kristine N. Hopfensperger, Esperanza Huerta Lwanga, Veikko Huhta, Tunsisa T. Hurisso, Basil V. Iannone, Madalina Iordache, Monika Joschko, Nobuhiro Kaneko, Radoslava Kanianska, Aidan M. Keith, Courtland A. Kelly, Maria L. Kernecker, Jonatan Klaminder, Armand W. Kone, Yahya Kooch, Sanna T. Kukkonen, H. Lalthanzara, Daniel R. Lammel, Iurii M. Lebedev, Yiqing Li, Juan B. Jesus Lidon, Noa K. Lincoln, Scott R. Loss, Raphael Marichal, Radim Matula, Jan Hendrik Moos, Gerardo Moreno, Alejandro Moron-Rios, Bart Muys, Johan Neirynck, Lindsey Norgrove, Marta Novo, Visa Nuutinen, Victoria Nuzzo, Mujeeb P. Rahman, Johan Pansu, Shishir Paudel, Guenola Peres, Lorenzo Perez-Camacho, Raul Pineiro, Jean-Francois Ponge, Muhammad Imtiaz Rashid, Salvador Rebollo, Javier Rodeiro-Iglesias, Miguel A. Rodriguez, Alexander M. Roth, Guillaume X. Rousseau, Anna Rozen, Ehsan Sayad, Loes van Schaik, Bryant C. Scharenbroch, Michael Schirrmann, Olaf Schmidt, Boris Schroeder, Julia Seeber, Maxim P. Shashkov, Jaswinder Singh, Sandy M. Smith, Michael Steinwandter, Jose A. Talavera, Dolores Trigo, Jiro Tsukamoto, Anne W. de Valenca, Steven J. Vanek, Inigo Virto, Adrian A. Wackett, Matthew W. Warren, Nathaniel H. Wehr, Joann K. Whalen, Michael B. Wironen, Volkmar Wolters, Irina V. Zenkova, Weixin Zhang, Erin K. Cameron, Nico Eisenhauer
Article
Plant Sciences
Rahmatullah Hashimi, Satoshi Kaneda, Nobuhiro Kaneko, Hiroyuki Ohta, Masakazu Komatsuzaki
SOIL SCIENCE AND PLANT NUTRITION
(2020)
Article
Multidisciplinary Sciences
Helen R. P. Phillips, Elizabeth M. Bach, Marie L. C. Bartz, Joanne M. Bennett, Remy Beugnon, Maria J. I. Briones, George G. Brown, Olga Ferlian, Konstantin B. Gongalsky, Carlos A. Guerra, Birgitta Koenig-Ries, Julia J. Krebs, Alberto Orgiazzi, Kelly S. Ramirez, David J. Russell, Benjamin Schwarz, Diana H. Wall, Ulrich Brose, Thibaud Decaens, Patrick Lavelle, Michel Loreau, Jerome Mathieu, Christian Mulder, Wim H. van der Putten, Matthias C. Rillig, Madhav P. Thakur, Franciska T. de Vries, David A. Wardle, Christian Ammer, Sabine Ammer, Miwa Arai, Fredrick O. Ayuke, Geoff H. Baker, Dilmar Baretta, Dietmar Barkusky, Robin Beausejour, Jose C. Bedano, Klaus Birkhofer, Eric Blanchart, Bernd Blossey, Thomas Bolger, Robert L. Bradley, Michel Brossard, James C. Burtis, Yvan Capowiez, Timothy R. Cavagnaro, Amy Choi, Julia Clause, Daniel Cluzeau, Anja Coors, Felicity V. Crotty, Jasmine M. Crumsey, Andrea Davalos, Dario J. Diaz Cosin, Annise M. Dobson, Anahi Dominguez, Andres Esteban Duhour, Nick van Eekeren, Christoph Emmerling, Liliana B. Falco, Rosa Fernandez, Steven J. Fonte, Carlos Fragoso, Andre L. C. Franco, Abegail Fusilero, Anna P. Geraskina, Shaieste Gholami, Grizelle Gonzalez, Michael J. Gundale, Monica Gutierrez Lopez, Branimir K. Hackenberger, Davorka K. Hackenberger, Luis M. Hernandez, Jeff R. Hirth, Takuo Hishi, Andrew R. Holdsworth, Martin Holmstrup, Kristine N. Hopfensperger, Esperanza Huerta Lwanga, Veikko Huhta, Tunsisa T. Hurisso, Basil V. Iannone, Madalina Iordache, Ulrich Irmler, Mari Ivask, Juan B. Jesus, Jodi L. Johnson-Maynard, Monika Joschko, Nobuhiro Kaneko, Radoslava Kanianska, Aidan M. Keith, Maria L. Kernecker, Armand W. Kone, Yahya Kooch, Sanna T. Kukkonen, H. Lalthanzara, Daniel R. Lammel, Iurii M. Lebedev, Edith Le Cadre, Noa K. Lincoln, Danilo Lopez-Hernandez, Scott R. Loss, Raphael Marichal, Radim Matula, Yukio Minamiya, Jan Hendrik Moos, Gerardo Moreno, Alejandro Moron-Rios, Hasegawa Motohiro, Bart Muys, Johan Neirynck, Lindsey Norgrove, Marta Novo, Visa Nuutinen, Victoria Nuzzo, P. Mujeeb Rahman, Johan Pansu, Shishir Paudel, Guenola Peres, Lorenzo Perez-Camacho, Jean-Francois Ponge, Joerg Prietzel, Irina B. Rapoport, Muhammad Imtiaz Rashid, Salvador Rebollo, Miguel A. Rodriguez, Alexander M. Roth, Guillaume X. Rousseau, Anna Rozen, Ehsan Sayad, Loes van Schaik, Bryant Scharenbroch, Michael Schirrmann, Olaf Schmidt, Boris Schroeder, Julia Seeber, Maxim P. Shashkov, Jaswinder Singh, Sandy M. Smith, Michael Steinwandter, Katalin Szlavecz, Jose Antonio Talavera, Dolores Trigo, Jiro Tsukamoto, Sheila Uribe-Lopez, Anne W. de Valenca, Inigo Virto, Adrian A. Wackett, Matthew W. Warren, Emily R. Webster, Nathaniel H. Wehr, Joann K. Whalen, Michael B. Wironen, Volkmar Wolters, Pengfei Wu, Irina V. Zenkova, Weixin Zhang, Erin K. Cameron, Nico Eisenhauer
Summary: Earthworms are important ecosystem engineers, but their diversity and distribution are not well known at large spatial scales. A global dataset with information on 10,840 sites and 184 species from 60 countries has been created to assist researchers in investigating a wide variety of pressing questions related to biodiversity.
Article
Art
Muhammad Asril, Yuni Lisafitri, Ainin Niswati, Suskandini Ratih Dirmawati, Risky Hadi Wibowo, Sipriyadi Sipriyadi
Summary: Phosphorus (P) is essential for plant growth and its availability in the environment is influenced by soil acidity. Phosphate-solubilizing bacteria, such as the EF.NAP 1 isolate identified as Burkholderia territorii, can release available phosphates. This isolate has the potential to promote plant growth and exhibits properties not reported in other strains.
INTERNATIONAL JOURNAL OF CONSERVATION SCIENCE
(2023)
Article
Chemistry, Multidisciplinary
Sri Haryani, Siti Herlina Dewi, Harjito
PERIODICO TCHE QUIMICA
(2020)
Article
Chemistry, Multidisciplinary
Agung Tri Prasetya, Edy Cahyono, Sudarmin, Sri Haryani
PERIODICO TCHE QUIMICA
(2020)
Proceedings Paper
Agronomy
S. Yusnaini, A. Niswati, M. A. S. Arif, Y. Komalasari, N. Kaneko
INTERNATIONAL CONFERENCE ON ORGANIC AGRICULTURE IN THE TROPICS: STATE OF THE ART, CHALLENGES AND OPPORTUNITIES
(2018)
Proceedings Paper
Agronomy
A. Niswati, S. Yusnaini, M. Utomo, Dermiyati, M. A. S. Arif, S. Haryani, N. Kaneko
INTERNATIONAL CONFERENCE ON ORGANIC AGRICULTURE IN THE TROPICS: STATE OF THE ART, CHALLENGES AND OPPORTUNITIES
(2018)
Proceedings Paper
Agriculture, Multidisciplinary
V. Muhardina, D. Ermaya, Y. Aisyah, S. Haryani
INTERNATIONAL CONFERENCE ON AGRICULTURE, ENVIRONMENT, AND FOOD SECURITY
(2018)
Proceedings Paper
Engineering, Multidisciplinary
Y. Aisyah, L. P. Irwanda, S. Haryani, N. Safriani
7TH AIC-ICMR ON SCIENCES AND ENGINEERING 2017
(2018)
Proceedings Paper
Chemistry, Multidisciplinary
S. Haryani, C. Kurniawan, Kasmui
12TH JOINT CONFERENCE ON CHEMISTRY
(2018)
Article
Soil Science
C. Beraud, F. Piola, J. Gervaix, G. Meiffren, C. Creuze des Chatelliers, A. Delort, C. Boisselet, S. Poussineau, E. Lacroix, A. A. M. Cantarel
Summary: This study investigated the soil factors influencing the development of biological denitrification inhibition (BDI) and found that initial soil moisture, ammonium concentration, and the initial abundance of certain microbial genes play significant roles in BDI development. Additionally, the research highlighted the relevance of biotic factors in explaining BDI and proposed the use of procyanidin concentration from plant belowground system as a new proxy for measuring BDI intensity.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)
Article
Soil Science
Yizhu Qiao, Tingting Wang, Qiwei Huang, Hanyue Guo, He Zhang, Qicheng Xu, Qirong Shen, Ning Ling
Summary: Soil microbial community coalescence, the mixing and interaction of microbial communities, has been found to enhance the stability and complexity of rhizobacterial networks, leading to improved plant health and biomass. This study investigated the effects of different degrees of bacterial community coalescence on plant disease resistance by mixing soils from healthy and diseased habitats for watermelon planting. The results showed that mixing in more healthy soil reduced the plant disease index and increased biomass by improving the stability and complexity of the rhizobacterial network. Core taxa Nitrospirillum and Singulisphaera were enriched in the rhizosphere from healthy soils and played important roles in disease suppression and regulating the positive cohesion and modularity of the networks. Overall, these findings provide insights into the potential mechanism of microbial community coalescence for improving plant microbial community function and suggest new tools for enhancing plant fitness via soil microbiota mixing.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)
Article
Soil Science
Mengqiu He, Shending Chen, Lei Meng, Xiaoqian Dan, Wenjie Wang, Qinying Zhu, Zucong Cai, Jinbo Zhang, Pierfrancesco Nardi, Christoph Mueller
Summary: Maize genotypes directly affect gene expression and nitrogen uptake capacity. The feedback between maize genotypes and soil nitrogen transformations, as well as their regulations on nitrogen uptake capacity, have been studied. The findings suggest that maize genotypes play a central role in regulating these feedbacks, which are important for maize breeding and enhancing maize production.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)
Article
Soil Science
Ke Shi, Jiahui Liao, Xiaoming Zou, Han Y. H. Chen, Manuel Delgado-Baquerizo, Zhengming Yan, Tingting Ren, Honghua Ruan
Summary: Through rewilding, microbial extracellular and cellular residues can continuously accumulate in soils and significantly contribute to soil organic carbon sequestration. Extracellular residues are mainly driven by fine root biomass, while cellular residues are mainly driven by soil nitrogen and organic carbon content.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)
Article
Soil Science
Sensen Chen, Ying Teng, Yongming Luo, Eiko Kuramae, Wenjie Ren
Summary: This study comprehensively assesses the effects of NMs on the soil microbiome through a global meta-analysis. The results reveal significant negative impacts of NMs on soil microbial diversity, biomass, activity, and function. Metal NMs, especially Ag NMs, have the most pronounced negative effects on various soil microbial community metrics.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)
Article
Soil Science
Shareen K. D. Sanders, Gerard Martinez-De Leon, Ludovico Formenti, Madhav P. Thakur
Summary: Collembolans, the diverse group of soil invertebrates, are affected by anthropogenic climate warming, which alters their diversity and density. In addition to abiotic stressors, changes in food availability, specifically the abundance of saprotrophic and mycorrhizal fungi, influence Collembola responses to climate warming. Collembolans prefer saprotrophic fungi but rely on mycorrhizal fungi when food sources are scarce. Understanding the mechanisms behind these dietary shifts in warm-dry and warm-wet soil conditions is crucial for predicting the impact of climate change on Collembola-fungal interactions.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)
Article
Soil Science
Wimonsiri Pingthaisong, Sergey Blagodatsky, Patma Vityakon, Georg Cadisch
Summary: A study found that mixing high-C/N ratio rice straw with low-C/N ratio groundnut stover can improve the chemical composition of the input, stimulate microbial growth, decrease the loss of residue-derived carbon in the soil, and reduce native soil carbon and nitrogen consumption.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)
Article
Soil Science
Jiachen Wang, Jie Zhao, Rong Yang, Xin Liu, Xuyuan Zhang, Wei Zhang, Xiaoyong Chen, Wende Yan, Kelin Wang
Summary: Nitrogen is vital for ecosystem productivity, restoration, and succession processes. This study found that legume intercropping was more effective than chemical nitrogen fertilizers in promoting the complexity and stability of the soil micro-food web, as it increased microbial and nematode communities and enhanced energy flow patterns.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)