Transcription factor and miRNA co-regulatory network reveals shared and specific regulators in the development of B cell and T cell

Transcription factor networks in B-cell differentiation link development to acute lymphoid leukemia

(2015) R. Somasundaram et al.   BLOOD

Regulation of early T-lineage gene expression and developmental progression by the progenitor cell transcription factor PU.1

(2015) Ameya Champhekar et al.   GENES & DEVELOPMENT

MiRNA and TF co-regulatory network analysis for the pathology and recurrence of myocardial infarction

(2015) Ying Lin et al.   Scientific Reports

NF-κB/STAT5/miR-155 network targets PU.1 in FLT3-ITD-driven acute myeloid leukemia

(2014) D Gerloff et al.   LEUKEMIA

AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors

(2014) Hong-Mei Zhang et al.   NUCLEIC ACIDS RESEARCH

Association between the Polymorphism rs3217927 of CCND2 and the Risk of Childhood Acute Lymphoblastic Leukemia in a Chinese Population

(2014) Heng Zhang et al.   PLoS One

The Myc-miR-17-92 axis amplifies B-cell receptor signaling via inhibition of ITIM proteins: a novel lymphomagenic feed-forward loop

(2013) J. N. Psathas et al.   BLOOD

Transcription factor and microRNA co-regulatory loops: important regulatory motifs in biological processes and diseases

(2013) H.-M. Zhang et al.   BRIEFINGS IN BIOINFORMATICS

MicroRNAs in lymphoma, from diagnosis to targeted therapy

(2013) Fabrice Jardin et al.   CURRENT OPINION IN ONCOLOGY

microRNA-17-92 cluster is a direct Nanog target and controls neural stem cell through Trp53inp1

(2013) Neha Garg et al.   EMBO JOURNAL

microRNA miR-17-92 cluster is highly expressed in epidermal Langerhans cells but not required for its development

(2013) L Zhou et al.   GENES AND IMMUNITY

Disruption of the MYC-miRNA-EZH2 loop to suppress aggressive B-cell lymphoma survival and clonogenicity

(2013) X Zhao et al.   LEUKEMIA

Transcription factor EBF1 is essential for the maintenance of B cell identity and prevention of alternative fates in committed cells

(2013) Robert Nechanitzky et al.   NATURE IMMUNOLOGY

Reconstruction and Analysis of Transcription Factor–miRNA Co-Regulatory Feed-Forward Loops in Human Cancers Using Filter-Wrapper Feature Selection

(2013) Chen Peng et al.   PLoS One

Epigenetic Regulation of B Lymphocyte Differentiation, Transdifferentiation, and Reprogramming

(2012) Bruna Barneda-Zahonero et al.   COMPARATIVE AND FUNCTIONAL GENOMICS

CD4–CD8 differentiation in the thymus: connecting circuits and building memories

(2012) Yumei Xiong et al.   CURRENT OPINION IN IMMUNOLOGY

The accessible chromatin landscape of the human genome

(2012) Robert E. Thurman et al.   NATURE

MicroRNA and transcription factor co-regulatory network analysis reveals miR-19 inhibits CYLD in T-cell acute lymphoblastic leukemia

(2012) Huashan Ye et al.   NUCLEIC ACIDS RESEARCH

Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma

(2012) Jingchun Sun et al.   PLoS Computational Biology

Transcription factor binding sites are highly enriched within microRNA precursor sequences

(2011) Jittima Piriyapongsa et al.   Biology Direct

Cyclin D2 is overexpressed in proliferation centers of chronic lymphocytic leukemia/small lymphocytic lymphoma

(2011) Takuro Igawa et al.   CANCER SCIENCE

Densely Interconnected Transcriptional Circuits Control Cell States in Human Hematopoiesis

(2011) Noa Novershtern et al.   CELL

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support

(2011) T. Vergoulis et al.   NUCLEIC ACIDS RESEARCH

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

A Novel microRNA and transcription factor mediated regulatory network in schizophrenia

(2010) An-Yuan Guo et al.   BMC Systems Biology

MicroRNA-34a Perturbs B Lymphocyte Development by Repressing the Forkhead Box Transcription Factor Foxp1

(2010) Dinesh S. Rao et al.   IMMUNITY

From the cradle to the grave: activities of GATA-3 throughout T-cell development and differentiation

(2010) Tomonori Hosoya et al.   IMMUNOLOGICAL REVIEWS

microRNA profiling in Epstein–Barr virus-associated B-cell lymphoma

(2010) Jochen Imig et al.   NUCLEIC ACIDS RESEARCH

The thymus microenvironment in regulating thymocyte differentiation

(2010) Jacy Gameiro et al.   Cell Adhesion & Migration

Foxp3-Dependent MicroRNA155 Confers Competitive Fitness to Regulatory T Cells by Targeting SOCS1 Protein

(2009) Li-Fan Lu et al.   IMMUNITY

Cutting Edge: The Foxp3 Target miR-155 Contributes to the Development of Regulatory T Cells

(2009) S. Kohlhaas et al.   JOURNAL OF IMMUNOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

The c-myb proto-oncogene and microRNA-15a comprise an active autoregulatory feedback loop in human hematopoietic cells

(2008) H. Zhao et al.   BLOOD

miR-142-3p restricts cAMP production in CD4+CD25− T cells and CD4+CD25+ TREG cells by targeting AC9 mRNA

(2008) Bo Huang et al.   EMBO REPORTS

γ-secretase inhibitors reverse glucocorticoid resistance in T cell acute lymphoblastic leukemia

(2008) Pedro J Real et al.   NATURE MEDICINE