Characterization and Comparative Analysis of the Milk Transcriptome in Two Dairy Sheep Breeds using RNA Sequencing

Transcriptome analysis of the mammary gland from GH transgenic goats during involution

(2015) Jian Lin et al.   GENE

Transcriptional profiling of mammary gland in Holstein cows with extremely different milk protein and fat percentage using RNA sequencing

(2014) Xiaogang Cui et al.   BMC GENOMICS

Comparison of five different RNA sources to examine the lactating bovine mammary gland transcriptome using RNA-Sequencing

(2014) Angela Cánovas et al.   Scientific Reports

WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013

(2013) Jing Wang et al.   NUCLEIC ACIDS RESEARCH

RNA Sequencing of the Human Milk Fat Layer Transcriptome Reveals Distinct Gene Expression Profiles at Three Stages of Lactation

(2013) Danielle G. Lemay et al.   PLoS One

Characterization and Comparative Analyses of Muscle Transcriptomes in Dorper and Small-Tailed Han Sheep Using RNA-Seq Technique

(2013) Chunlan Zhang et al.   PLoS One

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Short communication: Endoplasmic reticulum stress gene network expression in bovine mammary tissue during the lactation cycle1

(2012) G. Invernizzi et al.   JOURNAL OF DAIRY SCIENCE

GWA Analysis for Milk Production Traits in Dairy Sheep and Genetic Support for a QTN Influencing Milk Protein Percentage in the LALBA Gene

(2012) Elsa García-Gámez et al.   PLoS One

Polymorphism of the FAM13A, ABCG2, OPN, LAP3, HCAP-G, PPARGC1A genes and somatic cell count of Jersey cows – Preliminary study

(2012) Inga Kowalewska-Łuczak et al.   RESEARCH IN VETERINARY SCIENCE

Mammary gland development

(2012) Hector Macias et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Association of polymorphisms of beta-2-microglobulin gene (β2m) with milk IgG1 content in Chinese Holstein dairy cows

(2011) Shengguo Zhao et al.   Livestock Science

Perspectives on Immunoglobulins in Colostrum and Milk

(2011) Walter L. Hurley et al.   Nutrients

The influence of breed on the organoleptic characteristics of Zamorano sheep’s raw milk cheese and its assessment by instrumental analysis

(2010) MIGUEL A LURUEÑA-MARTÍNEZ et al.   INTERNATIONAL JOURNAL OF DAIRY TECHNOLOGY

Extracellular Matrix Composition Reveals Complex and Dynamic Stromal-Epithelial Interactions in the Mammary Gland

(2010) Ori Maller et al.   JOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

A functional genomics approach to evaluate candidate genes located in a QTL interval for milk production traits on BTA6

(2009) P. A. Sheehy et al.   ANIMAL GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Osteopontin: an early innate immune marker of Escherichia coli mastitis harbors genetic polymorphisms with possible links with resistance to mastitis

(2009) Karin Alain et al.   BMC GENOMICS

Identification in milk of a serum amyloid A peptide chemoattractant for B lymphoblasts

(2009) Berardo de Jesus Rodriguez et al.   BMC IMMUNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Gene expression in the human mammary epithelium during lactation: the milk fat globule transcriptome

(2008) Patricia D. Maningat et al.   PHYSIOLOGICAL GENOMICS