Global transcriptional and miRNA insights into bases of heterosis in hybridization of Cyprinidae

The fertility of the hybrid lineage derived from female Megalobrama amblycephala×male Culter alburnus

(2014) Jun Xiao et al.   ANIMAL REPRODUCTION SCIENCE

Identification and comparative analysis of the Pseudosciaena crocea microRNA transcriptome response to poly(I:C) infection using a deep sequencing approach

(2014) Pengzhi Qi et al.   FISH & SHELLFISH IMMUNOLOGY

RNA-seq Reveals Transcriptomic Shock Involving Transposable Elements Reactivation in Hybrids of Young Lake Whitefish Species

(2014) Anne-Marie Dion-Côté et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular responses to toxicological stressors: Profiling microRNAs in wild Atlantic salmon (Salmo salar) exposed to acidic aluminum-rich water

(2013) Elin H. Kure et al.   AQUATIC TOXICOLOGY

Influence of developmental stage and genotype on liver mRNA levels among wild, domesticated, and hybrid rainbow trout (Oncorhynchus mykiss)

(2013) Samantha L White et al.   BMC GENOMICS

Combined Serum CA19-9 and miR-27a-3p in Peripheral Blood Mononuclear Cells to Diagnose Pancreatic Cancer

(2013) W.-S. Wang et al.   Cancer Prevention Research

miR-363-5p regulates endothelial cell properties and their communication with hematopoietic precursor cells

(2013) Ana Costa et al.   Journal of Hematology & Oncology

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Genomic and epigenetic insights into the molecular bases of heterosis

(2013) Z. Jeffrey Chen   NATURE REVIEWS GENETICS

Genomic expression dominance in allopolyploids

(2012) Ryan A Rapp et al.   BMC BIOLOGY

MiR-93 enhances angiogenesis and metastasis by targeting LATS2

(2012) Ling Fang et al.   CELL CYCLE

Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility

(2012) Danny W-K Ng et al.   CURRENT OPINION IN PLANT BIOLOGY

Characterization of skin ulceration syndrome associated microRNAs in sea cucumber Apostichopus japonicus by deep sequencing

(2012) Chenghua Li et al.   FISH & SHELLFISH IMMUNOLOGY

Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes

(2012) I. Keller et al.   MOLECULAR ECOLOGY

Differences in transcription levels among wild, domesticated, and hybrid Atlantic salmon (Salmo salar) from two environments

(2012) PAUL V. DEBES et al.   MOLECULAR ECOLOGY

Homoeolog expression bias and expression level dominance in allopolyploids

(2012) C. E. Grover et al.   NEW PHYTOLOGIST

Global Analysis of the Small RNA Transcriptome in Different Ploidies and Genomic Combinations of a Vertebrate Complex – The Squalius alburnoides

(2012) Angela Inácio et al.   PLoS One

Reverse Genetics Screen in Zebrafish Identifies a Role of miR-142a-3p in Vascular Development and Integrity

(2012) Mukesh Kumar Lalwani et al.   PLoS One

miR-30b/30d Regulation of GalNAc Transferases Enhances Invasion and Immunosuppression during Metastasis

(2011) Avital Gaziel-Sovran et al.   CANCER CELL

Ancient Hybridization and Phenotypic Novelty within Lake Malawi's Cichlid Fish Radiation

(2011) M. J. Genner et al.   MOLECULAR BIOLOGY AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

(2011) J. C. Schnable et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Transcriptional Landscape of Cross-Specific Hybrids and Its Possible Link With Growth in Brook Charr ( Salvelinus fontinalis Mitchill)

(2010) Bérénice Bougas et al.   GENETICS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Divergence in gene regulation at young life history stages of whitefish (Coregonus sp.) and the emergence of genomic isolation

(2009) Arne W Nolte et al.   BMC EVOLUTIONARY BIOLOGY

miR-29a suppresses tristetraprolin, which is a regulator of epithelial polarity and metastasis

(2009) Christoph A Gebeshuber et al.   EMBO REPORTS

Population-specific gene expression responses to hybridization between farm and wild Atlantic salmon

(2009) Eric Normandeau et al.   Evolutionary Applications

Gene Expression Divergence and Hybrid Misexpression between Lake Whitefish Species Pairs (Coregonus spp. Salmonidae)

(2009) S. Renaut et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dosage Compensation by Gene-Copy Silencing in a Triploid Hybrid Fish

(2008) Irene Pala et al.   CURRENT BIOLOGY

Epigenetic, transposon and small RNA determinants of hybrid dysfunctions

(2008) P Michalak   HEREDITY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS