Diversity and functions of bacterial community in drinking water biofilms revealed by high-throughput sequencing

Pyrosequencing Reveals Bacterial Communities in Unchlorinated Drinking Water Distribution System: An Integral Study of Bulk Water, Suspended Solids, Loose Deposits, and Pipe Wall Biofilm

(2014) G. Liu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

Biased Diversity Metrics Revealed by Bacterial 16S Pyrotags Derived from Different Primer Sets

(2013) Lin Cai et al.   PLoS One

A dynamic and complex monochloramine stress response in Escherichia coli revealed by transcriptome analysis

(2013) Diane Holder et al.   WATER RESEARCH

Metagenomic analysis reveals significant changes of microbial compositions and protective functions during drinking water treatment

(2013) Yuanqing Chao et al.   Scientific Reports

Metagenomic Analyses of Drinking Water Receiving Different Disinfection Treatments

(2012) Vicente Gomez-Alvarez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Classification of metagenomic sequences: methods and challenges

(2012) S. S. Mande et al.   BRIEFINGS IN BIOINFORMATICS

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

(2012) Olivia U Mason et al.   ISME Journal

MetaCluster 4.0: A Novel Binning Algorithm for NGS Reads and Huge Number of Species

(2012) Yi Wang et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Pyrosequencing analysis of eukaryotic and bacterial communities in faucet biofilms

(2012) Ruyin Liu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Biofilms in drinking water and their role as reservoir for pathogens

(2011) Jost Wingender et al.   INTERNATIONAL JOURNAL OF HYGIENE AND ENVIRONMENTAL HEALTH

454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants

(2011) Tong Zhang et al.   ISME Journal

Effects of Diverse Water Pipe Materials on Bacterial Communities and Water Quality in the Annular Reactor

(2011) Hyun-Jung Jang   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Probing Roles of Lipopolysaccharide, Type 1 Fimbria, and Colanic Acid in the Attachment ofEscherichia coliStrains on Inert Surfaces

(2011) Yuanqing Chao et al.   LANGMUIR

Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

(2011) Rachel Mackelprang et al.   NATURE

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Legionella pneumophila transcriptional response to chlorine treatment

(2011) Charles Bodet et al.   WATER RESEARCH

Pyrosequencing Analysis of Bacterial Biofilm Communities in Water Meters of a Drinking Water Distribution System

(2010) P.-Y. Hong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models

(2010) E F Murphy et al.   GUT

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

(2010) Marcus J. Claesson et al.   NUCLEIC ACIDS RESEARCH

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial diversity in biofilms on water distribution pipes of different materials

(2010) J. Yu et al.   WATER SCIENCE AND TECHNOLOGY

Systematic artifacts in metagenomes from complex microbial communities

(2009) Vicente Gomez-Alvarez et al.   ISME Journal

Interactions of Cryptosporidium parvum, Giardia lamblia, Vaccinal Poliovirus Type 1, and Bacteriophages  X174 and MS2 with a Drinking Water Biofilm and a Wastewater Biofilm

(2008) K. Helmi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Detection of Viable but Nonculturable Escherichia coli O157:H7 Bacteria in Drinking Water and River Water

(2008) Y. Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Effect of biofilm on cast iron pipe corrosion in drinking water distribution system: Corrosion scales characterization and microbial community structure investigation

(2008) F. Teng et al.   CORROSION SCIENCE

Quorum sensing inPseudomonas aeruginosabiofilms

(2008) T. R. de Kievit   ENVIRONMENTAL MICROBIOLOGY

Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico

(2008) Mya Breitbart et al.   ENVIRONMENTAL MICROBIOLOGY