A novel one-class SVM based negative data sampling method for reconstructing proteome-wide HTLV-human protein interaction networks

AdaBoost Based Multi-Instance Transfer Learning for Predicting Proteome-Wide Interactions between Salmonella and Human Proteins

(2014) Suyu Mei et al.   PLoS One

Regulation of HTLV-1 Tax Stability, Cellular Trafficking and NF-κB Activation by the Ubiquitin-Proteasome Pathway

(2014) Alfonso Lavorgna et al.   Viruses-Basel

Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis

(2013) Philipp Blohm et al.   NUCLEIC ACIDS RESEARCH

Probability Weighted Ensemble Transfer Learning for Predicting Interactions between HIV-1 and Human Proteins

(2013) Suyu Mei   PLoS One

Human T-cell leukemia virus type 1: replication, proliferation and propagation by Tax and HTLV-1 bZIP factor

(2013) Masao Matsuoka et al.   Current Opinion in Virology

The need to accessorize: molecular roles of HTLV-1 p30 and HTLV-2 p28 accessory proteins in the viral life cycle

(2013) Rajaneesh Anupam et al.   Frontiers in Microbiology

HTLV-2 Tax Immortalizes Human CD4+Memory T Lymphocytes by Oncogenic Activation and Dysregulation of Autophagy

(2012) Tong Ren et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The HTLV-1-encoded protein HBZ directly inhibits the acetyl transferase activity of p300/CBP

(2012) Torsten Wurm et al.   NUCLEIC ACIDS RESEARCH

A Novel Biclustering Approach to Association Rule Mining for Predicting HIV-1–Human Protein Interactions

(2012) Anirban Mukhopadhyay et al.   PLoS One

Wip1 and p53 contribute to HTLV-1 Tax-induced tumorigenesis

(2012) Linda Zane et al.   Retrovirology

Comparative host protein interactions with HTLV-1 p30 and HTLV-2 p28: insights into difference in pathobiology of human retroviruses

(2012) Rami Doueiri et al.   Retrovirology

Host-pathogen interactome mapping for HTLV-1 and -2 retroviruses

(2012) Nicolas Simonis et al.   Retrovirology

Chapter 4: Protein Interactions and Disease

(2012) Mileidy W. Gonzalez et al.   PLoS Computational Biology

HTLV-1 Rex: the courier of viral messages making use of the host vehicle

(2012) Kazumi Nakano et al.   Frontiers in Microbiology

Interaction between the SH3 domain of Src family kinases and the proline-rich motif of HTLV-1 p13: a novel mechanism underlying delivery of Src family kinases to mitochondria

(2011) Elena Tibaldi et al.   BIOCHEMICAL JOURNAL

Revisiting the negative example sampling problem for predicting protein-protein interactions

(2011) Y. Park et al.   BIOINFORMATICS

Gene Ontology-driven inference of protein–protein interactions using inducers

(2011) Stefan R. Maetschke et al.   BIOINFORMATICS

JAK blockade and HTLV

(2011) L. Ratner   BLOOD

Supervised learning and prediction of physical interactions between human and HIV proteins

(2011) Matthew D. Dyer et al.   INFECTION GENETICS AND EVOLUTION

Molecular and cellular correlates of the CIITA-mediated inhibition of HTLV-2 Tax-2 transactivator function resulting in loss of viral replication

(2011) Chiara Orlandi et al.   Journal of Translational Medicine

Computational Prediction of Host-Parasite Protein Interactions between P. falciparum and H. sapiens

(2011) Stefan Wuchty   PLoS One

Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins

(2010) Y. Qi et al.   BIOINFORMATICS

Simple sequence-based kernels do not predict protein-protein interactions

(2010) J. Yu et al.   BIOINFORMATICS

Notch signaling contributes to proliferation and tumor formation of human T-cell leukemia virus type 1-associated adult T-cell leukemia

(2010) J. Pancewicz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genetic Landscape of a Cell

(2010) M. Costanzo et al.   SCIENCE

Structural similarity-based predictions of protein interactions between HIV-1 and Homo sapiens

(2010) Janet M Doolittle et al.   Virology Journal

Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression

(2009) Stefanie De Bodt et al.   BMC GENOMICS

Genome wide analysis of human genes transcriptionally and post-transcriptionally regulated by the HTLV-I protein p30

(2009) John M Taylor et al.   BMC GENOMICS

Ensemble non-negative matrix factorization methods for clustering protein–protein interactions

(2008) Derek Greene et al.   BIOINFORMATICS

An empirical framework for binary interactome mapping

(2008) Kavitha Venkatesan et al.   NATURE METHODS

VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus–host interaction networks

(2008) Vincent Navratil et al.   NUCLEIC ACIDS RESEARCH

VirusMINT: a viral protein interaction database

(2008) A. Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

The GOA database in 2009--an integrated Gene Ontology Annotation resource

(2008) D. Barrell et al.   NUCLEIC ACIDS RESEARCH